Parental gene:

ENSECAG00000022260

Aliases:None
Description:Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:F7BQJ6]
Organism:Horse (Equus caballus)
Coordinates:7:54071914..54074642(+)


>ENSECAG00000022260
ATGGGCAAAGAGAAGACCTATATCAATATTGTTGTTATTGGCCATGTGGACTCTGGCAAGTCCACCACCACTGGGCACCT
CATCTACAAGTGTGGGGGAATTGACAAGAGAACCATCGAGAAGTTTGAAAAGGAAGCAGGAGAGATGGGCAAGGGCTCCT
TCAAGTATGCCTGGGTGCTGGACAAGCTGAAGGCAGAGAGAGAGCGTGGCATCACCATAGACATCTCCCTGTGGAAGTTT
GAAACCAGCAAATACTACATCACCATCATTGATGCCCCAGGCCGCAGGGATTTCATCAAGAACGTGATTACTGGCACTTC
CCAGGCCGACTGCGCCGTGCTCATCGTGGCCGGCGGCGTGGGCGAGTTTGAGGCAGGCATCTCCAAGAACGGGCAGACCC
GCGAGCACGCGCTACTGGCCTTTACGCTAGGCGTGAAGCAGCTCATCGTGGCCGTCAACAAGATGGACTCAACTGAGCCT
GCCTACAGCGCTGCGCGCTTCCAAGAGATCACCAAGGAAGTGAGCGCCTACATCAAGAAGATCGGCTACAACCCGGCCAC
TGTGGCCTTCGTGCCCATCTCGGGCTGGCACGGCGACAACATGCTGGAGCCCAGCAGCAACATGCCCTGGTTCAAGGGCT
GGAAGGTGGAGAGGAAAGAGGGAAACGCCACCGGGGTGACTCTGCTGGAAGCTCTGGACTCCATCCTCCCGCCCACTCGC
CCAGTCAACAAGCCTCTGAGGCTGCCTCTGCAAGACGTGTACAAGATTGGAGGCATTGGCACTCCTGTAGGCCGCGTGGA
GACCGGCTTCCTGAAACCTGGGATGGTGGTCACCTTTGCCCCCAGCAACCTCACCACCGAGGTCAAGTCTGTGGAGATGC
ACCACGAAGCCCTGACTGAGGCCCTGCCTGGTGACAACGTGGGCTTCAACGTCAAGAATGTGTCTGTGAAGGACATTCAT
CGTGGAAATGTGGCTGGAGACAGCAAGAACGACCCCCCCATAGAGGCTGGCAGCTTTGTGGCACAGGTGATCATCTTGAA
CCACCCTGGGCAGATCCACGCCGGCTATACCCCAGTGCTGGACTGCCATACAGCCCACATCTCTTGCAAGTTTGCTGAAT
TGAGGGAAAAGATTGATAGGCGCTCAGGCAAGAAGCTGGAGAAAAACCCCAAGGCCCTGAAGTCGGGCGATGCAGCGATC
GTGCAGATGGTCCCCAGCAAGGCCATGTGTGTGGAGACTTTCTCTGAGTACCCACCTCTAGGCCATTTTGCTGTGCGGGA
CATGAGACAAACAGTGGCTGTTGGAGTCATCAAGACAGTGGATAAGAAGTCATCCACAGCTGGCAAGGTCACCAAGTCAG
CAGTAAAGGCGAGCAAGAAGTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 0 .11 RPM
SRP021940_embryo 0 .23 RPM
SRP021940_cerebellum 0 .05 RPM
SRP021940_testis 0 .00 RPM
SRP021940_placental_villous 0 .05 RPM
SRP021940_articular_cartilage 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007786 possible_ortholog 14 retrogenes
retro_amel_1064, retro_amel_1072, retro_amel_1079, retro_amel_1140, retro_amel_1167, retro_amel_1203, retro_amel_1227, retro_amel_1283, retro_amel_1371, retro_amel_160, retro_amel_1742, retro_amel_1797, retro_amel_1855, retro_amel_200,
Bos taurus ENSBTAG00000014534 possible_ortholog 3 retrogenes
retro_btau_114, retro_btau_115, retro_btau_192,
Canis familiaris ENSCAFG00000012222 possible_ortholog 1 retrogene
retro_cfam_1478,
Callithrix jacchus ENSCJAG00000010051 possible_ortholog 6 retrogenes
retro_cjac_1431, retro_cjac_3075, retro_cjac_34, retro_cjac_3735, retro_cjac_733, retro_cjac_97,
Cavia porcellus ENSCPOG00000004067 possible_ortholog 15 retrogenes
retro_cpor_1150, retro_cpor_1162, retro_cpor_1191, retro_cpor_1256, retro_cpor_1393, retro_cpor_1492, retro_cpor_1499, retro_cpor_348, retro_cpor_381, retro_cpor_387, retro_cpor_413, retro_cpor_709, retro_cpor_891, retro_cpor_918, retro_cpor_959,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000020363 within_species_paralog 2 retrogenes
retro_ecab_66, retro_ecab_93,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Echinops telfairi ENSETEG00000004236 possible_ortholog 14 retrogenes
retro_etel_1189, retro_etel_1248, retro_etel_1260, retro_etel_1429, retro_etel_1436, retro_etel_1472, retro_etel_1578, retro_etel_1602, retro_etel_1682, retro_etel_1808, retro_etel_2135, retro_etel_366, retro_etel_411, retro_etel_830,
Felis catus ENSFCAG00000030977 possible_ortholog 14 retrogenes
retro_fcat_1021, retro_fcat_1388, retro_fcat_1569, retro_fcat_1683, retro_fcat_1825, retro_fcat_184, retro_fcat_1915, retro_fcat_220, retro_fcat_221, retro_fcat_334, retro_fcat_515, retro_fcat_566, retro_fcat_688, retro_fcat_737,
Homo sapiens ENSG00000156508 possible_ortholog 27 retrogenes
retro_hsap_1093, retro_hsap_1181, retro_hsap_1567, retro_hsap_1671, retro_hsap_190, retro_hsap_2302, retro_hsap_2455, retro_hsap_2637, retro_hsap_2712, retro_hsap_278, retro_hsap_283, retro_hsap_2896, retro_hsap_2920, retro_hsap_2967, retro_hsap_2983, retro_hsap_3239, retro_hsap_3291, retro_hsap_3314, retro_hsap_363, retro_hsap_3701, retro_hsap_3706, retro_hsap_3758, retro_hsap_3825, retro_hsap_3917, retro_hsap_4220, retro_hsap_4730, retro_hsap_989,
Gorilla gorilla ENSGGOG00000025675 possible_ortholog 20 retrogenes
retro_ggor_1193, retro_ggor_1258, retro_ggor_1305, retro_ggor_1444, retro_ggor_1529, retro_ggor_20, retro_ggor_2006, retro_ggor_2021, retro_ggor_2056, retro_ggor_2066, retro_ggor_2205, retro_ggor_2526, retro_ggor_2637, retro_ggor_2826, retro_ggor_322, retro_ggor_375, retro_ggor_790, retro_ggor_860, retro_ggor_919, retro_ggor_978,
Latimeria chalumnae ENSLACG00000002952 possible_ortholog 1 retrogene
retro_lcha_39,
Macropus eugenii ENSMEUG00000005018 possible_ortholog 23 retrogenes
retro_meug_1067, retro_meug_110, retro_meug_1160, retro_meug_1240, retro_meug_1334, retro_meug_135, retro_meug_1421, retro_meug_1451, retro_meug_1465, retro_meug_1501, retro_meug_1662, retro_meug_1690, retro_meug_1710, retro_meug_1829, retro_meug_2023, retro_meug_2044, retro_meug_2050, retro_meug_316, retro_meug_601, retro_meug_755, retro_meug_792, retro_meug_850, retro_meug_920,
Microcebus murinus ENSMICG00000015319 possible_ortholog 21 retrogenes
retro_mmur_1027, retro_mmur_1116, retro_mmur_1145, retro_mmur_1182, retro_mmur_1190, retro_mmur_12, retro_mmur_1282, retro_mmur_1316, retro_mmur_1339, retro_mmur_1343, retro_mmur_1350, retro_mmur_1568, retro_mmur_171, retro_mmur_26, retro_mmur_273, retro_mmur_49, retro_mmur_682, retro_mmur_729, retro_mmur_825, retro_mmur_877, retro_mmur_9,
Myotis lucifugus ENSMLUG00000013537 possible_ortholog 24 retrogenes
retro_mluc_110, retro_mluc_1252, retro_mluc_1392, retro_mluc_1430, retro_mluc_1558, retro_mluc_1628, retro_mluc_1644, retro_mluc_1853, retro_mluc_1901, retro_mluc_1910, retro_mluc_2071, retro_mluc_2148, retro_mluc_2154, retro_mluc_2277, retro_mluc_2355, retro_mluc_2358, retro_mluc_2359, retro_mluc_2391, retro_mluc_441, retro_mluc_470, retro_mluc_677, retro_mluc_950, retro_mluc_956, retro_mluc_966,
Myotis lucifugus ENSMLUG00000016760 possible_ortholog 1 retrogene
retro_mluc_1250,
Macaca mulatta ENSMMUG00000004852 possible_ortholog 15 retrogenes
retro_mmul_1375, retro_mmul_1407, retro_mmul_1518, retro_mmul_1525, retro_mmul_1690, retro_mmul_1707, retro_mmul_1721, retro_mmul_1739, retro_mmul_1743, retro_mmul_1906, retro_mmul_2196, retro_mmul_2250, retro_mmul_323, retro_mmul_6, retro_mmul_848,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mustela putorius furo ENSMPUG00000003816 possible_ortholog 6 retrogenes
retro_mputfur_1514, retro_mputfur_1643, retro_mputfur_220, retro_mputfur_502, retro_mputfur_844, retro_mputfur_862,
Mustela putorius furo ENSMPUG00000004271 possible_ortholog 10 retrogenes
retro_mputfur_1179, retro_mputfur_1276, retro_mputfur_1351, retro_mputfur_1394, retro_mputfur_284, retro_mputfur_355, retro_mputfur_474, retro_mputfur_678, retro_mputfur_920, retro_mputfur_973,
Mustela putorius furo ENSMPUG00000008289 possible_ortholog 3 retrogenes
retro_mputfur_1030, retro_mputfur_609, retro_mputfur_761,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Nomascus leucogenys ENSNLEG00000001476 possible_ortholog 6 retrogenes
retro_nleu_1492, retro_nleu_1584, retro_nleu_1754, retro_nleu_1901, retro_nleu_235, retro_nleu_829,
Nomascus leucogenys ENSNLEG00000010060 possible_ortholog 2 retrogenes
retro_nleu_11, retro_nleu_1489,
Ornithorhynchus anatinus ENSOANG00000004908 possible_ortholog 1 retrogene
retro_oana_73,
Oryctolagus cuniculus ENSOCUG00000008481 possible_ortholog 3 retrogenes
retro_ocun_1102, retro_ocun_187, retro_ocun_71,
Otolemur garnettii ENSOGAG00000004630 possible_ortholog 8 retrogenes
retro_ogar_1067, retro_ogar_2034, retro_ogar_2329, retro_ogar_2497, retro_ogar_2583, retro_ogar_3191, retro_ogar_3270, retro_ogar_643,
Otolemur garnettii ENSOGAG00000009152 possible_ortholog 10 retrogenes
retro_ogar_1215, retro_ogar_1622, retro_ogar_1779, retro_ogar_1840, retro_ogar_2281, retro_ogar_2526, retro_ogar_2557, retro_ogar_3013, retro_ogar_3046, retro_ogar_3271,
Ochotona princeps ENSOPRG00000016685 possible_ortholog 6 retrogenes
retro_opri_1049, retro_opri_1076, retro_opri_1197, retro_opri_298, retro_opri_325, retro_opri_383,
Pongo abelii ENSPPYG00000016777 possible_ortholog 1 retrogene
retro_pabe_12,
Pan troglodytes ENSPTRG00000018347 possible_ortholog 1 retrogene
retro_ptro_71,
Sus scrofa ENSSSCG00000004489 possible_ortholog 4 retrogenes
retro_sscr_169, retro_sscr_492, retro_sscr_612, retro_sscr_758,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Ictidomys tridecemlineatus ENSSTOG00000028862 possible_ortholog 1 retrogene
retro_itri_1028,
Tupaia belangeri ENSTBEG00000012151 possible_ortholog 51 retrogenes
retro_tbel_1084, retro_tbel_1330, retro_tbel_1373, retro_tbel_1452, retro_tbel_166, retro_tbel_1841, retro_tbel_1969, retro_tbel_1994, retro_tbel_2088, retro_tbel_2091, retro_tbel_2179, retro_tbel_2205, retro_tbel_2206, retro_tbel_2218, retro_tbel_2232, retro_tbel_2419, retro_tbel_2505, retro_tbel_259, retro_tbel_2627, retro_tbel_2718, retro_tbel_2738, retro_tbel_2758, retro_tbel_282, retro_tbel_2976, retro_tbel_3032, retro_tbel_3065, retro_tbel_3067, retro_tbel_3281, retro_tbel_3307, retro_tbel_3315, retro_tbel_338, retro_tbel_354, retro_tbel_360, retro_tbel_372, retro_tbel_3813, retro_tbel_3865, retro_tbel_3967, retro_tbel_4125, retro_tbel_4192, retro_tbel_4282, retro_tbel_4352, retro_tbel_4370, retro_tbel_4466, retro_tbel_4496, retro_tbel_4639, retro_tbel_4660, retro_tbel_4695, retro_tbel_473, retro_tbel_588, retro_tbel_620, retro_tbel_903,
Tupaia belangeri ENSTBEG00000017170 possible_ortholog 16 retrogenes
retro_tbel_1335, retro_tbel_1406, retro_tbel_2677, retro_tbel_2899, retro_tbel_2966, retro_tbel_3336, retro_tbel_348, retro_tbel_3485, retro_tbel_3658, retro_tbel_3727, retro_tbel_3948, retro_tbel_4091, retro_tbel_4127, retro_tbel_4290, retro_tbel_4507, retro_tbel_4527,
Tursiops truncatus ENSTTRG00000000114 possible_ortholog 19 retrogenes
retro_ttru_1020, retro_ttru_1150, retro_ttru_1196, retro_ttru_1349, retro_ttru_1351, retro_ttru_1368, retro_ttru_1384, retro_ttru_1810, retro_ttru_1861, retro_ttru_1876, retro_ttru_384, retro_ttru_390, retro_ttru_401, retro_ttru_523, retro_ttru_664, retro_ttru_698, retro_ttru_844, retro_ttru_941, retro_ttru_998,
Tursiops truncatus ENSTTRG00000001835 possible_ortholog 1 retrogene
retro_ttru_993,
Vicugna pacos ENSVPAG00000007637 possible_ortholog 9 retrogenes
retro_vpac_369, retro_vpac_404, retro_vpac_510, retro_vpac_511, retro_vpac_523, retro_vpac_544, retro_vpac_582, retro_vpac_592, retro_vpac_606,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_802 94.16 100.00
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Download FASTA sequences of all ENSECAG00000022260 retrocopies