RetrogeneDB ID: | retro_etel_1260 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_237023:4202..5152(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000000275 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000004236 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.77 % |
Parental protein coverage: | 68.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
MGKEK.HINI.VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG | |
Retrocopy | MGKEKIHINIIVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
Parental | ITIDISLWKFE-TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL |
ITIDISLW.F..TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL | |
Retrocopy | ITIDISLWIFG<TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL |
Parental | AYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMP |
AYTL.VKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPD.VAFVPISGW.GDNML.PSANMP | |
Retrocopy | AYTLDVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDPVAFVPISGWDGDNMLAPSANMP |
Parental | WFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVT |
WFKGWKVT.K.GNASG..LLEALDCILPPT.PTDKPL.LPLQDVYKIGGIG.VPVGRVE.G.LKP.MVVT | |
Retrocopy | WFKGWKVTHKNGNASGSILLEALDCILPPTHPTDKPLHLPLQDVYKIGGIGIVPVGRVEAGLLKP*MVVT |
Parental | FAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSV |
F.PV.VTTEV.SVE.HHEALSEALPGDNVGFNVKNVSV | |
Retrocopy | FTPVKVTTEVNSVEIHHEALSEALPGDNVGFNVKNVSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |