Parental gene:

ENSETEG00000004236

Aliases:None
Description:None
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_303396:2625..4895(-)


>ENSETEG00000004236
ATGGGAAAGGAGAAGACCCATATCAACATCGTCGTCATTGGACACGTCGATTCTGGCAAGTCCACCACAACTGGTCACCT
GATCTACAAATGTGGTGGGATCGACAAGAGAACCATCGAAAAATTCGAGAAGGAAGCTGCTGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGATAAGCTGAAAGCCGAACGGGAACGTGGCATCACCATTGATATTTCCCTGTGGAAATTT
GAGACCAGCAAGTACTATGTGACCATCATCGATGCCCCTGGACACAGAGACTTCATTAAAAACATGATTACAGGAACATC
ACAGGCTGACTGTGCTGTCCTCATCGTTGCTGCTGGTGTGGGTGAATTTGAAGCTGGTATTTCCAAGAACGGGCAGACCC
GTGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAGCTCATTGTTGGTGTTAACAAAATGGATTCTACTGAGCCA
CCCTACAGCCAGAAGAGATACGAGGAAATTGTTAAGGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCTGACAC
AGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAACCAAGTGCTAATATGCCTTGGTTCAAGGGGT
GGAAGGTTACCCGTAAGGATGGCAATGCCAGTGGGACCACACTACTTGAAGCTCTGGATTGCATCCTGCCACCAACCCGC
CCAACTGACAAGCCCCTGCGCCTCCCTCTCCAGGACGTCTACAAGATTGGTGGTATCGGGACTGTCCCTGTGGGCAGAGT
GGAAACTGGGGTTCTGAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACCACTGAAGTGAAGTCTGTTGAAA
TGCACCACGAAGCTTTGAGTGAAGCTCTGCCTGGGGACAATGTAGGCTTCAATGTCAAGAACGTCTCTGTCAAAGATGTT
CGCCGTGGCAATGTGGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACCGCTCAGGTGATCATCCT
GAACCATCCAGGCCAAATCAGTGCTGGATACGCACCTGTGCTGGATTGTCACACTGCCCACATTGCTTGCAAGTTTGCTG
AGCTCAAAGAGAAGATTGATCGCCGTTCTGGCAAGAAGTTGGAAGATGGCCCCAAATTCTTGAAGTCTGGTGATGCTGCC
ATTGTTGACATGGTACCTGGCAAGCCCATGTGTGTGGAAAGCTTCTCTGACTATCCTCCTCTGGGTCGTTTTGCTGTCCG
AGACATGAGACAGACCGTTGCTGTGGGTGTCATCAAGGCTGTGGACAAAAAGGCTGCTGGCGCTGGCAAGGTCACCAAGT
CTGCCCAGAAGGCTCAGAAGGCTAAATGA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Gorilla gorilla ENSGGOG00000025675 ortholog_one2one 20 retrogenes
retro_ggor_1193, retro_ggor_1258, retro_ggor_1305, retro_ggor_1444, retro_ggor_1529, retro_ggor_20, retro_ggor_2006, retro_ggor_2021, retro_ggor_2056, retro_ggor_2066, retro_ggor_2205, retro_ggor_2526, retro_ggor_2637, retro_ggor_2826, retro_ggor_322, retro_ggor_375, retro_ggor_790, retro_ggor_860, retro_ggor_919, retro_ggor_978,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Microcebus murinus ENSMICG00000015319 ortholog_one2many 21 retrogenes
retro_mmur_1027, retro_mmur_1116, retro_mmur_1145, retro_mmur_1182, retro_mmur_1190, retro_mmur_12, retro_mmur_1282, retro_mmur_1316, retro_mmur_1339, retro_mmur_1343, retro_mmur_1350, retro_mmur_1568, retro_mmur_171, retro_mmur_26, retro_mmur_273, retro_mmur_49, retro_mmur_682, retro_mmur_729, retro_mmur_825, retro_mmur_877, retro_mmur_9,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Otolemur garnettii ENSOGAG00000009152 ortholog_one2one 10 retrogenes
retro_ogar_1215, retro_ogar_1622, retro_ogar_1779, retro_ogar_1840, retro_ogar_2281, retro_ogar_2526, retro_ogar_2557, retro_ogar_3013, retro_ogar_3046, retro_ogar_3271,
Pongo abelii ENSPPYG00000016777 ortholog_one2many 1 retrogene
retro_pabe_12,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Tupaia belangeri ENSTBEG00000012151 ortholog_one2one 51 retrogenes
retro_tbel_1084, retro_tbel_1330, retro_tbel_1373, retro_tbel_1452, retro_tbel_166, retro_tbel_1841, retro_tbel_1969, retro_tbel_1994, retro_tbel_2088, retro_tbel_2091, retro_tbel_2179, retro_tbel_2205, retro_tbel_2206, retro_tbel_2218, retro_tbel_2232, retro_tbel_2419, retro_tbel_2505, retro_tbel_259, retro_tbel_2627, retro_tbel_2718, retro_tbel_2738, retro_tbel_2758, retro_tbel_282, retro_tbel_2976, retro_tbel_3032, retro_tbel_3065, retro_tbel_3067, retro_tbel_3281, retro_tbel_3307, retro_tbel_3315, retro_tbel_338, retro_tbel_354, retro_tbel_360, retro_tbel_372, retro_tbel_3813, retro_tbel_3865, retro_tbel_3967, retro_tbel_4125, retro_tbel_4192, retro_tbel_4282, retro_tbel_4352, retro_tbel_4370, retro_tbel_4466, retro_tbel_4496, retro_tbel_4639, retro_tbel_4660, retro_tbel_4695, retro_tbel_473, retro_tbel_588, retro_tbel_620, retro_tbel_903,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_etel_366 89.69 95.89
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2. retro_etel_411 91.83 65.58
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3. retro_etel_830 93.60 97.62
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4. retro_etel_1189 89.77 100.00
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5. retro_etel_1248 96.92 69.48
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6. retro_etel_1260 92.77 68.61
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7. retro_etel_1429 73.43 71.43
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8. retro_etel_1436 56.98 54.76
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9. retro_etel_1472 51.84 51.30
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10. retro_etel_1578 69.88 69.05
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11. retro_etel_1602 72.59 58.01
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12. retro_etel_1682 62.69 55.63
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13. retro_etel_1808 84.36 65.58
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14. retro_etel_2135 71.27 57.14
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Download FASTA sequences of all ENSETEG00000004236 retrocopies