RetrogeneDB ID: | retro_acar_115 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 4:9321271..9322217(+) | ||
Located in intron of: | ENSACAG00000003719 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSACAG00000003756 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIV-GADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL |
MPREDRATWKSNYFLKIIQLLDDYPKCFIV.G....GSKQMQQI.M.L.GKAVVLMGKNTM.RK.IRGHL | |
Retrocopy | MPREDRATWKSNYFLKIIQLLDDYPKCFIV>GSRQHGSKQMQQICMFLHGKAVVLMGKNTMLRKVIRGHL |
Parental | ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQ |
ENNPALEKLL.H...N.GFV.TK..LTEI.DMLLANKVPA.AR...IAPCDVTVPAQNT.LGPEKTSFFQ | |
Retrocopy | ENNPALEKLLSHVHFNMGFVLTKDNLTEI*DMLLANKVPATARVSVIAPCDVTVPAQNTDLGPEKTSFFQ |
Parental | ALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEE |
AL.ITTKISRGTIEIL.DVQLIKTGDKVGASE.TLLNMLNISPFSF.LIIQQVFDNGSIYN..VLDITEE | |
Retrocopy | ALDITTKISRGTIEILIDVQLIKTGDKVGASEPTLLNMLNISPFSFELIIQQVFDNGSIYNSKVLDITEE |
Parental | TLRGRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLAVAVETDYSFPLAEKVKAFLADPSAFVAAA |
TL.G.FLEGVRNVAS.CLQIGYP.VASVPHSIINGYKRVLAVAVETDYSFPLAEKVKAFLADPSAFVAAA | |
Retrocopy | TL*GSFLEGVRNVASICLQIGYPAVASVPHSIINGYKRVLAVAVETDYSFPLAEKVKAFLADPSAFVAAA |
Parental | PVAVETVAPVAAAPAKVEAKEESEESDEDMGFGLFD |
PVAVET..PVAAAPAKVEAKEESEE.D.DMGFGLFD | |
Retrocopy | PVAVETADPVAAAPAKVEAKEESEELDKDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 895 .88 RPM |
SRP009831_brain | 0 .00 RPM | 237 .88 RPM |
SRP009831_dewlap | 0 .00 RPM | 417 .90 RPM |
SRP009831_embryo | 0 .00 RPM | 1500 .50 RPM |
SRP009831_heart | 0 .10 RPM | 914 .17 RPM |
SRP009831_liver | 0 .00 RPM | 889 .79 RPM |
SRP009831_lung | 0 .00 RPM | 635 .91 RPM |
SRP009831_ovary | 0 .04 RPM | 248 .21 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 380 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000003756 | 2 retrocopies |
retro_acar_111, retro_acar_115 ,
|
Ailuropoda melanoleuca | ENSAMEG00000005144 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000010227 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000008677 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000021812 | 5 retrocopies | |
Equus caballus | ENSECAG00000015816 | 2 retrocopies | |
Felis catus | ENSFCAG00000013354 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026582 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000016409 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000001970 | 11 retrocopies | |
Macaca mulatta | ENSMMUG00000009157 | 2 retrocopies | |
Mus musculus | ENSMUSG00000067274 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005749 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003843 | 4 retrocopies | |
Petromyzon marinus | ENSPMAG00000001339 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005022 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000001148 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001623 | 2 retrocopies |