RetrogeneDB ID: | retro_acar_111 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 3:162913278..162913862(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSACAG00000003756 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.3 % |
Parental protein coverage: | 63.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRG-TIEILSDVQLIKTGDKVGASEATLLNMLNISPF |
....CD..VPA.NTGL..EKTS..QALGI.TKI..G.T.EILS.VQLIKTG.K.GAS.A.LLNMLNISP. | |
Retrocopy | SLPSCDMKVPA*NTGLSHEKTSLSQALGIITKICGG<TFEILSGVQLIKTGIKMGASKANLLNMLNISPL |
Parental | SFGLIIQQVFDNGSIYNPEVLDITEETLRGRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLAVAV |
SF.L.IQQVF...SIYN.EVLDI.EETL.G.FLEGV.NVASVCLQ..YP...SVP.SIING...VL.VAV | |
Retrocopy | SFELTIQQVFNKDSIYNLEVLDIIEETLQGYFLEGVHNVASVCLQMSYPAIPSVPYSIINGH-NVLIVAV |
Parental | ETDYSFPLAEKVKAFLADPSAFVAAAPVAVETVAPVAAAPAKVEAKEESEESDEDMGFGLFD |
ETDYSF.LA.KV..FLA.PS.FVAAA...VE..AP.A.APAKVEAKEES...D.DMG.GLFD | |
Retrocopy | ETDYSFQLADKV--FLAGPSVFVAAALATVELAAPAAVAPAKVEAKEES---DKDMGCGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 1 .74 RPM | 895 .88 RPM |
SRP009831_brain | 0 .14 RPM | 237 .88 RPM |
SRP009831_dewlap | 0 .00 RPM | 417 .90 RPM |
SRP009831_embryo | 0 .09 RPM | 1500 .50 RPM |
SRP009831_heart | 0 .10 RPM | 914 .17 RPM |
SRP009831_liver | 0 .94 RPM | 889 .79 RPM |
SRP009831_lung | 1 .16 RPM | 635 .91 RPM |
SRP009831_ovary | 0 .00 RPM | 248 .21 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 380 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000003756 | 2 retrocopies |
retro_acar_111 , retro_acar_115,
|
Ailuropoda melanoleuca | ENSAMEG00000005144 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000010227 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000008677 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000021812 | 5 retrocopies | |
Equus caballus | ENSECAG00000015816 | 2 retrocopies | |
Felis catus | ENSFCAG00000013354 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026582 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000016409 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000001970 | 11 retrocopies | |
Macaca mulatta | ENSMMUG00000009157 | 2 retrocopies | |
Mus musculus | ENSMUSG00000067274 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005749 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003843 | 4 retrocopies | |
Petromyzon marinus | ENSPMAG00000001339 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005022 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000001148 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001623 | 2 retrocopies |