RetrogeneDB ID: | retro_ecab_585 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 22:7993932..7994347(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000007546 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000015816 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.57 % |
Parental protein coverage: | 98.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NISPFSFGLIIQQVFDNGSIYN-PEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR |
NI.P.SF.L.IQQ.FDN.SI.N.PE.L......L...FLEG...V.SV.LQ.GYP.VASVPHSIINGYK. | |
Retrocopy | NIGPSSFRLVIQQLFDNSSIHN>PECL-ASRRKLNPHFLEGACHVTSVRLQLGYPPVASVPHSIINGYKW |
Parental | VLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD |
VLALS...D.TFPLAEK..AFLAD.SAFVAAA..A...T.APAA.AAPAKVEAKE..EESD.DMGFGL.D | |
Retrocopy | VLALSEGADDTFPLAEKGQAFLADASAFVAAALMATTPTGAPAATAAPAKVEAKEAWEESDQDMGFGLSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .18 RPM | 2549 .85 RPM |
SRP021940_cerebellum | 0 .00 RPM | 505 .56 RPM |
SRP021940_embryo | 0 .05 RPM | 1287 .74 RPM |
SRP021940_placental_villous | 0 .05 RPM | 862 .44 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 1580 .66 RPM |
SRP021940_testis | 0 .00 RPM | 753 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000003756 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000002745 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008677 | 3 retrocopies | |
Equus caballus | ENSECAG00000015816 | 2 retrocopies |
retro_ecab_1090, retro_ecab_585 ,
|
Homo sapiens | ENSG00000089157 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000026582 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000016409 | 12 retrocopies | |
Macaca mulatta | ENSMMUG00000009157 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003843 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000016429 | 6 retrocopies | |
Petromyzon marinus | ENSPMAG00000001339 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005022 | 5 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001623 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000005658 | 1 retrocopy |