RetrogeneDB ID: | retro_acar_184 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343389.1:547040..547628(+) | ||
Located in intron of: | ENSACAG00000005252 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPH3 | ||
Ensembl ID: | ENSACAG00000010365 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.45 % |
Parental protein coverage: | 57.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GGYGGFDEYGGYNNYGYGNDGYDDRMRDGRGMGGHGYGGAGDASSGFQGGHFVHMRGLPFRATENDIANF |
G.YGGFDEYGGYNNYGYGNDGYDDRMRDGRGMGGHGYGGAGDASSGFQGGHFVHMRGLPFRATEN.IANF | |
Retrocopy | GRYGGFDEYGGYNNYGYGNDGYDDRMRDGRGMGGHGYGGAGDASSGFQGGHFVHMRGLPFRATENNIANF |
Parental | FSPLTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQHRYIELFLNSTAGGGAGMGGYGRDG |
FSPLTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQHRYIELFLNSTAGGGAGMGGYGRDG | |
Retrocopy | FSPLTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQHRYIELFLNSTAGGGAGMGGYGRDG |
Parental | MDQGGYGSVGRMGMGSSYSGGYGTPDGLGGYGRGSGNSGGYYGQGNMGGAGWRGMY |
MDQGGYGSV.RMGMGSSYSGGYGTPDGLGGYGRGSGNSGGYYG.GNMGG.GWRGMY | |
Retrocopy | MDQGGYGSVERMGMGSSYSGGYGTPDGLGGYGRGSGNSGGYYGKGNMGGGGWRGMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 5 .84 RPM | 129 .42 RPM |
SRP009831_brain | 0 .95 RPM | 89 .66 RPM |
SRP009831_dewlap | 1 .27 RPM | 73 .66 RPM |
SRP009831_embryo | 11 .20 RPM | 305 .90 RPM |
SRP009831_heart | 1 .92 RPM | 149 .32 RPM |
SRP009831_liver | 0 .70 RPM | 44 .05 RPM |
SRP009831_lung | 0 .91 RPM | 96 .26 RPM |
SRP009831_ovary | 0 .73 RPM | 69 .15 RPM |
SRP009831_skeletal_muscle | 0 .44 RPM | 20 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000010365 | 1 retrocopy |
retro_acar_184 ,
|
Ailuropoda melanoleuca | ENSAMEG00000018064 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014316 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000019154 | 2 retrocopies | |
Equus caballus | ENSECAG00000007190 | 1 retrocopy | |
Gallus gallus | ENSGALG00000003947 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013139 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011997 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004443 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011676 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013322 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000011814 | 1 retrocopy |