RetrogeneDB ID: | retro_ecab_912 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:70013026..70014035(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPH3 | ||
Ensembl ID: | ENSECAG00000007190 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:HGNC Symbol;Acc:5043] |
Percent Identity: | 87.61 % |
Parental protein coverage: | 97.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MDWVMKHNGPNDASDGTVR-LRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI |
MDWVMKHNGPND.SDGTV....GLPF.CSKEEIVQFFQGLEIVPNGITL.M.Y.GRSTGEAFVQFASKE. | |
Retrocopy | MDWVMKHNGPNDVSDGTVQ<ICGLPFDCSKEEIVQFFQGLEIVPNGITLMMHYKGRSTGEAFVQFASKEM |
Parental | AENALGKH-KERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMRR |
AENA.GK..KERIGHRY..IF.S.RSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAG.GSMYDRMR. | |
Retrocopy | AENAPGKS<KERIGHRYVQIFKSIRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGSGSMYDRMRS |
Parental | GGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATE |
.GDGYDGGYGGFDD.GGYNNYG.G.DGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATE | |
Retrocopy | RGDGYDGGYGGFDDCGGYNNYGCGDDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATE |
Parental | NDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMG |
ND.A.FFSPLNPI.VH..IGADGRATGEADVEFVTHEDAVAA..KDKNNMQHRYIELF.NSTPGGGSGMG | |
Retrocopy | NDVASFFSPLNPI*VHVGIGADGRATGEADVEFVTHEDAVAAICKDKNNMQHRYIELFWNSTPGGGSGMG |
Parental | GSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGM |
GSGMGGYGRDG.DNQGGYGSVGRMG.GN.YSGGYGTPDGL.GYG.GGGG.GG..G..G. | |
Retrocopy | GSGMGGYGRDGIDNQGGYGSVGRMGTGNCYSGGYGTPDGLSGYGPGGGGNGGCMGKDGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 24 .79 RPM |
SRP021940_cerebellum | 0 .00 RPM | 30 .95 RPM |
SRP021940_embryo | 0 .26 RPM | 131 .06 RPM |
SRP021940_placental_villous | 0 .10 RPM | 60 .48 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 36 .46 RPM |
SRP021940_testis | 0 .06 RPM | 61 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000010365 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000018064 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014316 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000019154 | 2 retrocopies | |
Equus caballus | ENSECAG00000007190 | 1 retrocopy |
retro_ecab_912 ,
|
Equus caballus | ENSECAG00000014429 | 1 retrocopy | |
Gallus gallus | ENSGALG00000003947 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013139 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011997 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004443 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000013322 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000011814 | 1 retrocopy |