Parental gene: | HNRNPH3, ENSBTAG00000014316 |
| Aliases: | HNRNPH3, HNRPH3 |
| Description: | heterogeneous nuclear ribonucleoprotein H3 [Source:RefSeq peptide;Acc:NP_001193508] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 28:24904445..24915401(+) |
>ENSBTAG00000014316
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTGCCATTTGGTTG
CAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAACATTGACGATGGACTACCAGG
GGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCAGAAAATGCTCTGGGGAAACACAAGGAAAGA
ATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGAGTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCT
GGGCCAGCGACCAGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATG
ACAGAATGCGACGAGGAGGTGATGGATATGATGGTGGTTATGGAGGTTTTGATGACTATGGTGGCTATAATAATTATGGC
TATGGAAATGATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGACATGGTTATGGTGGAGCTGGTGATGC
AAGTTCGGGTTTTCATGGTGGTCATTTTGTACATATGAGAGGACTGCCTTTTCGTGCAACTGAAAATGATATTGCTAATT
TCTTCTCACCACTAAATCCAATCCGAGTACATATTGATATTGGAGCTGATGGCAGAGCAACAGGAGAAGCAGATGTAGAG
TTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAACATGCAACATCGATACATCGAACTTTTCTT
GAATTCAACTCCTGGAGGCGGCTCTGGAATGGGAGGTTCTGGAATGGGAGGCTACGGCAGAGATGGAATGGATAATCAGG
GAGGCTATGGATCTGTTGGAAGAATGGGAATGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGCTTGGGTGGT
TACGGCCGTGGTGGTGGAGGCAGTGGCGGTTATTATGGGCAAGGTGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTA
A
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTGCCATTTGGTTG
CAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAACATTGACGATGGACTACCAGG
GGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCAGAAAATGCTCTGGGGAAACACAAGGAAAGA
ATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGAGTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCT
GGGCCAGCGACCAGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATG
ACAGAATGCGACGAGGAGGTGATGGATATGATGGTGGTTATGGAGGTTTTGATGACTATGGTGGCTATAATAATTATGGC
TATGGAAATGATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGACATGGTTATGGTGGAGCTGGTGATGC
AAGTTCGGGTTTTCATGGTGGTCATTTTGTACATATGAGAGGACTGCCTTTTCGTGCAACTGAAAATGATATTGCTAATT
TCTTCTCACCACTAAATCCAATCCGAGTACATATTGATATTGGAGCTGATGGCAGAGCAACAGGAGAAGCAGATGTAGAG
TTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAACATGCAACATCGATACATCGAACTTTTCTT
GAATTCAACTCCTGGAGGCGGCTCTGGAATGGGAGGTTCTGGAATGGGAGGCTACGGCAGAGATGGAATGGATAATCAGG
GAGGCTATGGATCTGTTGGAAGAATGGGAATGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGCTTGGGTGGT
TACGGCCGTGGTGGTGGAGGCAGTGGCGGTTATTATGGGCAAGGTGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTA
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 99 .49 RPM |
| SRP017611_kidney | 115 .34 RPM |
| SRP017611_liver | 34 .73 RPM |
| ERP005899_muscle | 66 .46 RPM |
| ERP005899_liver | 86 .95 RPM |
| SRP030211_testis | 177 .22 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000010365 | ortholog_one2many | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000018064 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000009389 | within_species_paralog | 1 retrogene | |
| Bos taurus | ENSBTAG00000020513 | within_species_paralog | 1 retrogene | |
| Bos taurus | ENSBTAG00000021838 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019154 | ortholog_one2many | 2 retrogenes | |
| Equus caballus | ENSECAG00000007190 | ortholog_one2one | 1 retrogene | |
| Gallus gallus | ENSGALG00000003947 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000013139 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000011997 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004443 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000011676 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013322 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000011814 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_470 | 61.78 | 54.62 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1504 | 78.17 | 72.25 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000014316 retrocopies