RetrogeneDB ID: | retro_meug_1627 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold49376:2398..3009(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPH3 | ||
Ensembl ID: | ENSMEUG00000013139 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:HGNC Symbol;Acc:5043] |
Percent Identity: | 50.93 % |
Parental protein coverage: | 60.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKHNGPNDAASDGTVRLRGLPFGCSKEEIVQFF-TGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAEN |
.K...PN....D..V..RGLPF.C.K..I.QFF..GLEI.PNGIT...D...RS.GEAFVQFA..EIAE. | |
Retrocopy | LKYTAPNSLDRDDYVCFRGLPFSCNKKGITQFF<SGLEIIPNGITFPVDF*WRSCGEAFVQFAFQEIAEK |
Parental | ALGKHKERIGHRYIEIFKSSRSEIKGFYDPPRRLLGQR-PGPYDRPLGGRGGYYGAGRGSMYDRMRRGGD |
AL.KHKER.GHRY.EIFKSS..E....YDP...L.....PGP..RP..GR..Y....RGS.....R.G.. | |
Retrocopy | ALKKHKERTGHRYTEIFKSSLTEVHNHYDPAQELMARKHPGPHGRPQAGRC-YDSLSRGSGIEGVRCGA- |
Parental | GYDGGYGGFDDYGGYNNYGYGNEGFDDR-MRDGRGMGGHGYGGAGDASSGFHG--GHFVHMRGLPFRATE |
....GY.G.DD...YN..GY..E....R......GM.GH.Y...GD..S.F....GHFVHMRGLP..A.E | |
Retrocopy | -CEIGYTGNDD---YN--GYSDEYYFGRNLSFYLGMSGHIY---GDSWSTFQNPAGHFVHMRGLPYNAIE |
Parental | NDIANF |
N.I..F | |
Retrocopy | NRIYDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000010365 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000018064 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014316 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000019154 | 2 retrocopies | |
Equus caballus | ENSECAG00000007190 | 1 retrocopy | |
Gallus gallus | ENSGALG00000003947 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013139 | 1 retrocopy |
retro_meug_1627 ,
|
Mustela putorius furo | ENSMPUG00000011997 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004443 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011676 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013322 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000011814 | 1 retrocopy |