RetrogeneDB ID: | retro_amel_172 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192345.1:362222..362654(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSAMEG00000011270 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MKFNPCVTSDGSKTRKRRFNAPSHVRRKIMSSPLSEELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
.KFNP.VTSD.SK..KR.F.A.SH..RKIMSSPLS.ELR.KYNV.SMPI.KDDEVQVV..HYKGQQIGKV | |
Retrocopy | VKFNPFVTSDRSKNHKRHFGALSHIHRKIMSSPLSKELR*KYNV*SMPIQKDDEVQVVQEHYKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQFGKEKGKYKEELI |
VQVYRKK.VIYI.RVQ.EKANGTTV.V.I.P.KVVITRLK.DK...KILE..AKSRQ.G.EKGKYKEE.I | |
Retrocopy | VQVYRKKSVIYIKRVQ*EKANGTTVRVAIQPRKVVITRLKVDKGHEKILEYNAKSRQVGREKGKYKEETI |
Parental | EKMQ |
EKMQ | |
Retrocopy | EKMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |