Parental gene:

RPL26L1, ENSDNOG00000002289

Aliases:None
Description:ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1975:109858..115241(+)


>ENSDNOG00000002289
ATGAAGTTCAACCCCTTTGTGACCTCGGACCGCAGCAAGAACCGCAAACGCCACTTCAATGCCCCTTCGCACGTACGAAG
GAAGATCATGTCGTCCCCACTCTCCAAGGAGCTGCGGCAGAAATACAACGTTCGCTCCATGCCCATCCGCAAGGACGACG
AGGTCCAGGTGGTTCGAGGACACTACAAAGGTCAGCAGATTGGCAAGGTAGTCCAGGTGTACAGAAAGAAATACGTCATC
TACATTGAGAGGGTGCAGCGTGAGAAGGCTAATGGCACCACTGTCCATGTGGGCATTCACCCAAGCAAGGTGGTTATCAC
CAGGCTAAAACTGGACAAAGATCGGAAAAAAATTCTTGAACGCAAAGCCAAATCTCGACAAGTTGGAAAGGAAAAAGGCA
AATATAAGGAAGAACTTATTGAAAAAATGCAGGAATGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 12 .64 RPM
SRP012922_cerebellum 13 .33 RPM
SRP012922_heart 5 .34 RPM
SRP012922_kidney 10 .68 RPM
SRP012922_liver 6 .04 RPM
SRP012922_lung 16 .04 RPM
SRP012922_quadricep_muscle 9 .17 RPM
SRP012922_spleen 13 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011270 possible_ortholog 7 retrogenes
retro_amel_1106, retro_amel_1477, retro_amel_172, retro_amel_272, retro_amel_560, retro_amel_788, retro_amel_887,
Dasypus novemcinctus ENSDNOG00000002470 within_species_paralog 3 retrogenes
retro_dnov_2054, retro_dnov_2174, retro_dnov_378,
Felis catus ENSFCAG00000026949 ortholog_one2one 1 retrogene
retro_fcat_524,
Homo sapiens ENSG00000037241 ortholog_one2one 2 retrogenes
retro_hsap_586, retro_hsap_837,
Latimeria chalumnae ENSLACG00000007599 ortholog_many2many 2 retrogenes
retro_lcha_5, retro_lcha_8,
Microcebus murinus ENSMICG00000011312 ortholog_one2one 10 retrogenes
retro_mmur_1020, retro_mmur_1144, retro_mmur_313, retro_mmur_327, retro_mmur_346, retro_mmur_412, retro_mmur_471, retro_mmur_623, retro_mmur_72, retro_mmur_75,
Myotis lucifugus ENSMLUG00000009799 possible_ortholog 1 retrogene
retro_mluc_1556,
Macaca mulatta ENSMMUG00000003070 ortholog_one2one 1 retrogene
retro_mmul_676,
Mustela putorius furo ENSMPUG00000012729 possible_ortholog 2 retrogenes
retro_mputfur_1624, retro_mputfur_190,
Oryctolagus cuniculus ENSOCUG00000006172 ortholog_one2one 4 retrogenes
retro_ocun_1015, retro_ocun_1224, retro_ocun_354, retro_ocun_845,
Procavia capensis ENSPCAG00000002246 ortholog_one2one 10 retrogenes
retro_pcap_137, retro_pcap_157, retro_pcap_188, retro_pcap_204, retro_pcap_337, retro_pcap_404, retro_pcap_419, retro_pcap_42, retro_pcap_422, retro_pcap_448,
Pteropus vampyrus ENSPVAG00000003253 ortholog_one2one 8 retrogenes
retro_pvam_1062, retro_pvam_1208, retro_pvam_122, retro_pvam_353, retro_pvam_688, retro_pvam_71, retro_pvam_769, retro_pvam_877,
Sus scrofa ENSSSCG00000016989 ortholog_one2one 3 retrogenes
retro_sscr_1104, retro_sscr_462, retro_sscr_685,
Ictidomys tridecemlineatus ENSSTOG00000026876 ortholog_one2one 1 retrogene
retro_itri_1141,
Tarsius syrichta ENSTSYG00000001655 possible_ortholog 2 retrogenes
retro_tsyr_1805, retro_tsyr_759,
Tursiops truncatus ENSTTRG00000010624 ortholog_one2one 8 retrogenes
retro_ttru_1070, retro_ttru_1124, retro_ttru_1694, retro_ttru_1818, retro_ttru_364, retro_ttru_386, retro_ttru_474, retro_ttru_646,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_300 63.76 99.31
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2. retro_dnov_306 84.14 100.00
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3. retro_dnov_467 74.44 91.72
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4. retro_dnov_646 87.50 99.31
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5. retro_dnov_666 91.10 99.31
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6. retro_dnov_681 88.19 99.31
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7. retro_dnov_760 60.40 100.00
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8. retro_dnov_850 84.83 100.00
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9. retro_dnov_970 90.24 84.83
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10. retro_dnov_985 70.55 100.00
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11. retro_dnov_1106 71.76 88.97
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12. retro_dnov_1147 88.97 99.31
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13. retro_dnov_1171 86.11 99.31
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14. retro_dnov_1258 81.51 100.00
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15. retro_dnov_1304 90.97 99.31
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16. retro_dnov_1319 76.15 72.41
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17. retro_dnov_1344 73.64 87.59
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18. retro_dnov_1381 97.54 84.14
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19. retro_dnov_1501 86.99 99.31
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20. retro_dnov_1676 84.83 100.00
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21. retro_dnov_1819 77.55 100.00
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22. retro_dnov_1959 88.89 99.31
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23. retro_dnov_2039 70.55 100.00
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24. retro_dnov_2041 75.00 84.14
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25. retro_dnov_2061 86.96 94.48
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26. retro_dnov_2078 88.97 99.31
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27. retro_dnov_2103 79.45 100.00
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28. retro_dnov_2116 81.51 100.00
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29. retro_dnov_2121 91.03 99.31
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30. retro_dnov_2287 88.89 99.31
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31. retro_dnov_2297 91.72 100.00
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32. retro_dnov_2438 70.00 88.97
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33. retro_dnov_2545 62.16 100.00
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34. retro_dnov_2580 84.83 100.00
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35. retro_dnov_2632 86.84 78.62
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Download FASTA sequences of all ENSDNOG00000002289 retrocopies