RetrogeneDB ID: | retro_dnov_2287 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_61215:35210..35639(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSDNOG00000002289 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTS.RSKN.KRHFNAPSH.RRKIMSSPLSKELRQKYNV.SMPIRKDD.VQVVRGHYKGQQIGK. | |
Retrocopy | MKFNPFVTSGRSKNHKRHFNAPSHIRRKIMSSPLSKELRQKYNV*SMPIRKDD-VQVVRGHYKGQQIGKA |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELI |
VQV.RK.YVIYI...QREKANGTTVHVGIHPSKVVITRLKLDKD.KK.L..KAKSRQVGKEKGKYKEE.I | |
Retrocopy | VQVNRKEYVIYIKWGQREKANGTTVHVGIHPSKVVITRLKLDKDCKKTLKCKAKSRQVGKEKGKYKEETI |
Parental | EKMQ |
EKMQ | |
Retrocopy | EKMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .97 RPM | 12 .64 RPM |
SRP012922_cerebellum | 0 .27 RPM | 13 .33 RPM |
SRP012922_heart | 0 .46 RPM | 5 .34 RPM |
SRP012922_kidney | 1 .37 RPM | 10 .68 RPM |
SRP012922_liver | 0 .31 RPM | 6 .04 RPM |
SRP012922_lung | 1 .99 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 0 .69 RPM | 9 .17 RPM |
SRP012922_spleen | 1 .03 RPM | 13 .62 RPM |