RetrogeneDB ID: | retro_amel_788 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192637.1:1302583..1303014(+) | ||
Located in intron of: | ENSAMEG00000001544 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSAMEG00000011270 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 69.66 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MKFNPCVTSDGSKTRKRRFNAPSHVRRKIMSSPL-SEELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
MKF.P.VTSD.SK..KR.F.APSH..RK.MS..L.S..LRQKYNV..MPI.KDD.VQV..GHYKGQQ..K | |
Retrocopy | MKFSPFVTSD*SKNCKRHFHAPSHIYRKSMSFSL<SQKLRQKYNVQCMPIQKDDKVQVG*GHYKGQQMCK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQFGKEKGKYKEEL |
V.QVYR.KYVI.IE.VQ.EKANGTT..VGIH.SK.V...LKLDKD.KKILE.KAKS.Q..KEKGKYK.E. | |
Retrocopy | VAQVYRTKYVISIE*VQWEKANGTTTRVGIHSSKTVLSNLKLDKDHKKILEHKAKSHQVEKEKGKYK*ET |
Parental | IEKMQ |
I.K.Q | |
Retrocopy | IGKVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |