RetrogeneDB ID:

retro_amel_270

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192371.1:1224738..1224908(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TMA7
Ensembl ID:ENSAMEG00000001193
Aliases:None
Description:translation machinery associated 7 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26932]


Retrocopy-Parental alignment summary:






>retro_amel_270
AAGAAGAAATCCCTGAAGCAGCCCAAGAAGCAGGCCAAGGAGATGAATGAGGAAGCTAAGACATTCAAGTAGAAACAGAG
GAACAGAAGAAACTCAAGGAGCTAAAAGGGAAGGCCATGGGGAAAGGCCCCCCCCCCACCACAGGTGGCATTAAGAAATG
TGGCAAAAGA

ORF - retro_amel_270 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 66.1 %
Parental protein coverage: 96.61 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKKKPLKQPKKQAKEMDEEDKAFKQKQK-EEQKKLEELKAKAAGK-GPLATGGIKKSGKK
KKK.LKQPKKQAKEM.EE.K.FK.KQ..E..K.L.ELK.KA.GK.....TGGIKK.GK.
RetrocopyKKKSLKQPKKQAKEMNEEAKTFK*KQR<EQKK-LKELKGKAMGKXXXXTTGGIKKCGKR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_270 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_270 was not experimentally validated.

Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 72 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG00000001193 6 retrocopies
Callithrix jacchus ENSCJAG0000000287118 retrocopies
Felis catus ENSFCAG000000269025 retrocopies
Homo sapiens ENSG0000023211211 retrocopies
Gorilla gorilla ENSGGOG000000280443 retrocopies
Mus musculus ENSMUSG0000009153711 retrocopies
Pan troglodytes ENSPTRG000000417699 retrocopies
Rattus norvegicus ENSRNOG000000426892 retrocopies
Rattus norvegicus ENSRNOG000000472251 retrocopy
Sus scrofa ENSSSCG000000113516 retrocopies



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