RetrogeneDB ID: | retro_rnor_1709 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:270877494..270877666(-) | ||
Located in intron of: | ENSRNOG00000015678 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSRNOG00000047225 | ||
Aliases: | Tma7, Ccdc72 | ||
Description: | None |
Percent Identity: | 72.13 % |
Parental protein coverage: | 98.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL-KAKAAGKGPLATGGIKKSGKK |
.G.KKK.LKQPK..AKEMDEED.A..QK.K...KKL.EL.KAKAA.KGP.AT.GIKKSGKK | |
Retrocopy | TGFKKKYLKQPKM*AKEMDEED*AIRQKEK---KKLREL>KAKAAEKGPMATNGIKKSGKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .14 RPM |
SRP017611_liver | 0 .00 RPM | 0 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001193 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000002871 | 18 retrocopies |
retro_cjac_1370, retro_cjac_1449, retro_cjac_1504, retro_cjac_1667, retro_cjac_1670, retro_cjac_1704, retro_cjac_1918, retro_cjac_2092, retro_cjac_2258, retro_cjac_2422, retro_cjac_2629, retro_cjac_2673, retro_cjac_2692, retro_cjac_2799, retro_cjac_3651, retro_cjac_536, retro_cjac_81, retro_cjac_849,
|
Felis catus | ENSFCAG00000026902 | 5 retrocopies | |
Homo sapiens | ENSG00000232112 | 11 retrocopies | |
Gorilla gorilla | ENSGGOG00000028044 | 3 retrocopies | |
Mus musculus | ENSMUSG00000091537 | 11 retrocopies | |
Pan troglodytes | ENSPTRG00000041769 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000042689 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000047225 | 1 retrocopy |
retro_rnor_1709 ,
|
Sus scrofa | ENSSSCG00000011351 | 6 retrocopies |