RetrogeneDB ID: | retro_bdis_29 | ||
Retrocopylocation | Organism: | Purple false brome (Brachypodium distachyon) | |
Coordinates: | 1:74573342..74574215(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | BRADI1G78697 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | BRADI3G02680 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.67 % |
Parental protein coverage: | 71.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LELGKINIKRFADGEIYVQLQESVRGCDVFLVQPSCPPANENLMELLIMIDACRRASAKNITAVIPYFGY |
.ELG.I..KRFADGE.YVQLQESVRGCDVFLVQP.CPPANENLMELLIMIDACRRASAK.ITAVIPYFGY | |
Retrocopy | MELGRIKMKRFADGELYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKTITAVIPYFGY |
Parental | ARSDRKSQGRESIAAKLVANMITEAGANRVLVSDLHSSQAMGYFDIPVDHVYGQPVILDYLASKTICSND |
AR.DRK.QGRESIAAKLVAN.IT.AGA.RVL..DLHS.Q..GYFDIPVDHVYGQPVILDYLASKTIC.ND | |
Retrocopy | ARADRKMQGRESIAAKLVANLITHAGAHRVLACDLHSGQSIGYFDIPVDHVYGQPVILDYLASKTICPND |
Parental | LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMMDDMIDTAGTIAKGA |
.VVVSPDVGGVARARAFAKKLSDAPLAIVDKRR.GHN.AEVMNLIGDVKGKVAVM.DDMIDTAGT.AKGA | |
Retrocopy | VVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRLGHNQAEVMNLIGDVKGKVAVMVDDMIDTAGTMAKGA |
Parental | ELLHQEGAREVYACCTHAVFSPPAIERLSSGLFQEVITTNTIPLKEDKNFPQLTILSVANLLGETIWRVH |
ELLH.EGAR.VYAC.THAV.SPPA.ERLS.GLFQEVI.TNT.P..E...FPQLT.LSVANLLGETIWRVH | |
Retrocopy | ELLHREGARAVYACSTHAVLSPPAVERLSGGLFQEVIITNTVPVPEHQRFPQLTVLSVANLLGETIWRVH |
Parental | DDCSV |
DD.SV | |
Retrocopy | DDSSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI3G02680 | 1 retrocopy |
retro_bdis_29 ,
|
Leersia perrieri | LPERR02G02000 | 1 retrocopy | |
Oryza brachyantha | OB02G12100 | 1 retrocopy | |
Oryza barthii | OBART02G02200 | 1 retrocopy | |
Oryza glumaepatula | OGLUM02G02060 | 1 retrocopy | |
Oryza punctata | OPUNC02G01640 | 1 retrocopy | |
Oryza sativa japonica | OS02G0127700 | 1 retrocopy | |
Triticum aestivum | Traes_6AS_88F0CBEC0 | 1 retrocopy |