RetrogeneDB ID: | retro_osat_35 | ||
Retrocopylocation | Organism: | Rice subsp. japonica (Oryza sativa japonica) | |
Coordinates: | 3:19134..20283(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OS03G0100040 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OS02G0127700 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.42 % |
Parental protein coverage: | 77.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RLRIFSGTANPSLSQEIASYLGLELGKINIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLI |
RLRIFSGTANP.L.QE.A.YLG.ELG...IKRFADGE.YVQLQESVRGCDVFLVQPTCPPANENLMELLI | |
Retrocopy | RLRIFSGTANPRLAQEVACYLGMELGRVKIKRFADGELYVQLQESVRGCDVFLVQPTCPPANENLMELLI |
Parental | MIDACRRASAKNITAVIPYFGYARADRKSQG-RESIAAKLVANMITEAGANRVLVCDLHSSQAMGYFDIP |
MIDACRRASAK.ITAV.PYFGYARADRK..G.RESIAAKLVAN.ITEAGA.RVL.CDLHS.Q..GYFDIP | |
Retrocopy | MIDACRRASAKTITAVVPYFGYARADRKMRGGRESIAAKLVANLITEAGAHRVLACDLHSGQSIGYFDIP |
Parental | VDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGD |
VDHVYGQPVILDYLASKTIC.D..VVVSPDVGGVARAR.FAKKLSDAPLAIVDKRR.GHN..EV..LIGD | |
Retrocopy | VDHVYGQPVILDYLASKTICPDEVVVVSPDVGGVARARTFAKKLSDAPLAIVDKRRQGHNQSEVVHLIGD |
Parental | VRGKVAVMMDDMIDTAGTIAKGAELLHQEGAREVYACCTHAVFSPPAIERLSSGLFQEVIITNTIPLKED |
VRGKVAVM.DDMIDTAGT...GAELLH.EGAR.VYAC.THAV.SPPA..RLSSGLFQEVI.TNT.P.... | |
Retrocopy | VRGKVAVMVDDMIDTAGTVSQGAELLHREGARAVYACSTHAVLSPPAVDRLSSGLFQEVIVTNTVPVLHH |
Parental | KSFPQLTILSVANLLGETIWRVHDDCSV |
..FPQLT.LSVANLLGETIWRVHDDCSV | |
Retrocopy | RTFPQLTVLSVANLLGETIWRVHDDCSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI3G02680 | 1 retrocopy | |
Leersia perrieri | LPERR02G02000 | 1 retrocopy | |
Oryza brachyantha | OB02G12100 | 1 retrocopy | |
Oryza barthii | OBART02G02200 | 1 retrocopy | |
Oryza glumaepatula | OGLUM02G02060 | 1 retrocopy | |
Oryza nivara | ONIVA02G02120 | 1 retrocopy | |
Oryza punctata | OPUNC02G01640 | 1 retrocopy | |
Oryza rufipogon | ORUFI02G02210 | 1 retrocopy | |
Oryza sativa japonica | OS02G0127700 | 1 retrocopy |
retro_osat_35 ,
|
Triticum aestivum | Traes_6AS_88F0CBEC0 | 1 retrocopy |