RetrogeneDB ID: | retro_btau_1013 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 23:44090793..44091596(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FBLIM1 | ||
Ensembl ID: | ENSBTAG00000018725 | ||
Aliases: | None | ||
Description: | Filamin-binding LIM protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1JQB5] |
Percent Identity: | 79. % |
Parental protein coverage: | 71.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 7 |
Parental | MASKPEKRVASSVFITLVPPRRDEAVVEEVRRAACEAWPGRPWES-APTKAPGAGSVGKLRSWMPPGRAA |
MASKPEKRVASSVFITLVPPRRDEAVVEEVRRAACEA.PG.PWES.APTKAPGAGSVGKLRSWMPPGR.A | |
Retrocopy | MASKPEKRVASSVFITLVPPRRDEAVVEEVRRAACEAQPGHPWESPAPTKAPGAGSVGKLRSWMPPGRTA |
Parental | APGPAVPPQLSNGGC-SLPP-PPLDVDDALPDLDLLPPPPPPPAADLP-PPDEEPHSAMGASLISDLEQL |
APGPAVPP.LSNGGC.SLP...PLDVDDALPD.DLLPP.PPPP..DLP.PPD.EP....G.......... | |
Retrocopy | APGPAVPPPLSNGGC<SLPS<SPLDVDDALPDPDLLPPLPPPPPVDLP<PPDKEPPPRWGHHSFQTWGSC |
Parental | HLPPPPP-PPQALVEGPPLQPRPSHLKPAEEEL-PPPPE-EPVSFPEREASTDICAFCHKTVSPRELAVE |
..P.P.P.P.QALVEGPPLQPRPSHLKPAEEEL.P..P..EPV.FPER....DICAFC.KTVSPREL.VE | |
Retrocopy | TCPSPSPIPAQALVEGPPLQPRPSHLKPAEEELLPTTPK<EPVGFPER----DICAFCRKTVSPRELGVE |
Parental | AMKRQYH-AQCFTCRVCRRQLAGQSFYQKDGRPLCEPCYQDT-LEKCGKCG-EVVREHIIRALGQAFHPS |
AM.RQY..AQCFTCRVCR..LAGQSFYQKDGRPLCE.CYQDT.LEKC.KC...VVRE.IIRALGQAFHPS | |
Retrocopy | AMERQYP<AQCFTCRVCRQRLAGQSFYQKDGRPLCEACYQDT<LEKCAKCA<KVVRERIIRALGQAFHPS |
Parental | C |
C | |
Retrocopy | C |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1 .01 RPM |
ERP005899_muscle | 0 .11 RPM | 80 .82 RPM |
SRP017611_brain | 0 .00 RPM | 8 .54 RPM |
SRP017611_kidney | 0 .24 RPM | 43 .33 RPM |
SRP017611_liver | 0 .00 RPM | 1 .21 RPM |
SRP030211_testis | 0 .02 RPM | 8 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018725 | 1 retrocopy |
retro_btau_1013 ,
|
Bos taurus | ENSBTAG00000024772 | 1 retrocopy | |
Homo sapiens | ENSG00000162458 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015190 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000032243 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007650 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001837 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000208 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009000 | 1 retrocopy |