RetrogeneDB ID: | retro_pabe_751 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:22512116..22512882(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FBLIM1 | ||
Ensembl ID: | ENSPPYG00000001837 | ||
Aliases: | None | ||
Description: | filamin-binding LIM protein 1 [Source:RefSeq peptide;Acc:NP_001127194] |
Percent Identity: | 84.11 % |
Parental protein coverage: | 75.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GCPPPPPVLDGEDALPDLDLLPPPPPPPPVLLPSEEEAPAS-MGASLIADLEQLHLSPPLPPPPPQAPAE |
GCPPPPPVLDG.D.LP.LDLLPP..P.PPVLLPSEEEAP.S.MGASLIADLEQLHL.P...PPPPQAPAE | |
Retrocopy | GCPPPPPVLDG*DVLPHLDLLPPASPSPPVLLPSEEEAPGS>MGASLIADLEQLHLPPS--PPPPQAPAE |
Parental | RPSVQPSP--LRPVEEELPPPPAERVEKGASTDICAFCHKTVSPRELAVEAMKRQYHAQCFTCRTCRRQL |
.PSVQP.P..LRP.E.ELP.PPAE.VE..ASTDI.AFCH.TVSP.ELAV.AMK.QYH.Q.FTCRTCRRQL | |
Retrocopy | GPSVQPGPDPLRPMEKELPLPPAEPVEREASTDIRAFCHMTVSPQELAVKAMKGQYHVQFFTCRTCRRQL |
Parental | AGQSFYQKDGRPLCEPCYQDTLERCGKCGEVVRDHIIRALGQAFHPSCFTCVTCARCIGDESFALGSQNE |
AGQSFYQKD.RPLCE.C.QDTL..C.KCGEVVR.HIIRA.GQAFHPSCFTCVTCARCIGDESFA.GSQNE | |
Retrocopy | AGQSFYQKDVRPLCEHCCQDTLQKCSKCGEVVREHIIRAPGQAFHPSCFTCVTCARCIGDESFAPGSQNE |
Parental | VYCLDDFYRKFAPVCSICENPIIPRDGKDAFKIECMGRSFHENCYRCE |
VYCLDDFYRKFAPVCSICENPIIPRDGKDAFKIEC.GR.FHENCYR.E | |
Retrocopy | VYCLDDFYRKFAPVCSICENPIIPRDGKDAFKIECTGRNFHENCYRYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .85 RPM |
SRP007412_heart | 0 .03 RPM | 8 .37 RPM |
SRP007412_kidney | 0 .03 RPM | 5 .80 RPM |
SRP007412_liver | 0 .00 RPM | 2 .72 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_778 |
Pan troglodytes | retro_ptro_544 |
Macaca mulatta | retro_mmul_1095 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018725 | 1 retrocopy | |
Homo sapiens | ENSG00000162458 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015190 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000032243 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001837 | 2 retrocopies |
retro_pabe_3809, retro_pabe_751 ,
|
Pan troglodytes | ENSPTRG00000000208 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009000 | 1 retrocopy |