RetrogeneDB ID: | retro_pvam_415 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3013:166597..167481(+) | ||
Located in intron of: | ENSPVAG00000013236 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FBLIM1 | ||
Ensembl ID: | ENSPVAG00000009000 | ||
Aliases: | None | ||
Description: | filamin binding LIM protein 1 [Source:HGNC Symbol;Acc:24686] |
Percent Identity: | 70.71 % |
Parental protein coverage: | 77.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GGCSLPPPALDGEDALPDLDLLPPPPPPPPAYLPP-CDDQPPASMGASLISDLEQLHL--PPPPPQSLAE |
GGCSLPP..LDGED.LPDLDLLPPPP..PPAYLPP..DD.PPASMGA..ISDLEQL.L..PPPPPQ.L.E | |
Retrocopy | GGCSLPP-TLDGEDPLPDLDLLPPPPATPPAYLPPPSDDEPPASMGAQFISDLEQLRLRSPPPPPQPLVE |
Parental | GAPFQPQPGHLRPAEEKLPPPPAEPVGLPEREASTDICAFCHKTVSPRELAVEAMKRQYHAQCFTCRTCR |
G..F.PQ.....PA.E.L.P.P.EPVG.P..EASTD...FC.KTV..R.LA.EA..RQYHA.CFTC..C. | |
Retrocopy | GPQFKPQLNSQGPAKEELLPAPEEPVGFPKKEASTDVGVFCRKTVPLRALAMEAVNRQYHA*CFTCCNCC |
Parental | RQLAGQSFYQKDGRPLCEPCYQDTLEKCGKCGGVVQEHIIRAL-GRAFHPACFTCVTCARCIGDESFALD |
RQ..GQSFYQKDG.PLCEP.Y.DTLEKCGKCG.VV.EHIIRAL.GR.FHPACF..V.C..CI..E..ALD | |
Retrocopy | RQPVGQSFYQKDGWPLCEPYYRDTLEKCGKCGEVVREHIIRAL<GRSFHPACFMSVICSHCIRKENLALD |
Parental | NQNEVYCLDDFYRKF-APVCSICENPIIPRDGKDAFKIECMGRNFHENCYRCEDCRILLSVEPTDQGCYP |
.QNEVY.L.DF.RKF.AP.C.ICE.PIIP.DG.DAF.I.CM.RN.H.NCYRCEDCRILLSV.P.DQGCY. | |
Retrocopy | SQNEVYYLEDFCRKFVAPMCHICESPIIPQDGTDAFIIKCMRRNLHKNCYRCEDCRILLSVKPADQGCYL |
Parental | LDNRLFCKPCHVKRSAA |
L...LFCKP.H.KRSA. | |
Retrocopy | LNKHLFCKPSHMKRSAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018725 | 1 retrocopy | |
Homo sapiens | ENSG00000162458 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015190 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000032243 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007650 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001837 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000208 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009000 | 1 retrocopy |
retro_pvam_415 ,
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