RetrogeneDB ID:

retro_pvam_415

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3013:166597..167481(+)
Located in intron of:ENSPVAG00000013236
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FBLIM1
Ensembl ID:ENSPVAG00000009000
Aliases:None
Description:filamin binding LIM protein 1 [Source:HGNC Symbol;Acc:24686]


Retrocopy-Parental alignment summary:






>retro_pvam_415
GGGGGATGCTCTCTTCCTCCTACCCTGGATGGTGAGGACCCGCTCCCGGACCTGGACCTCCTTCCACCTCCGCCGGCAAC
CCCACCAGCGTACCTGCCGCCGCCTTCTGATGACGAGCCCCCTGCCTCAATGGGGGCGCAATTCATTTCGGACTTGGAGC
AGCTGCGTCTGCGCTCACCCCCGCCCCCACCACAGCCCCTGGTGGAGGGCCCTCAATTCAAGCCTCAGCTGAATAGTCAG
GGACCTGCAAAGGAGGAGCTGCTGCCTGCCCCAGAAGAGCCTGTTGGCTTCCCTAAGAAAGAGGCATCCACAGACGTTGG
TGTCTTCTGCCGCAAGACTGTGCCCCTCCGAGCGCTGGCCATGGAAGCCGTGAATAGACAGTACCACGCCTAGTGCTTCA
CGTGCTGCAACTGCTGCCGCCAGCCGGTGGGGCAGAGCTTCTACCAGAAGGATGGGTGGCCCCTCTGCGAACCCTACTAC
CGCGACACCCTGGAGAAGTGTGGCAAGTGTGGTGAGGTGGTCCGGGAACACATCATCAGGGCCCTGGGCGGAGCTTTCAC
CCAGCCTGTTTCATGAGTGTGATCTGTTCCCATTGCATCAGGAAGGAGAACCTTGCCCTGGACAGCCAGAATGAGGTGTA
CTACCTAGAGGACTTCTGTAGGAAATTTGTTGCTCCTATGTGCCATATATGTGAGAGTCCCATCATCCCCCAAGATGGGA
CGGATGCCTTCATAATTAAGTGCATGCGAAGAAACTTGCATAAAAATTGTTATAGGTGCGAGGACTGTAGGATCCTCCTC
TCTGTGAAGCCTGCGGACCAAGGCTGCTACCTCCTGAACAAACATCTCTTCTGCAAGCCAAGCCACATGAAGCGGAGTGC
CTCT

ORF - retro_pvam_415 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.71 %
Parental protein coverage: 77.45 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGGCSLPPPALDGEDALPDLDLLPPPPPPPPAYLPP-CDDQPPASMGASLISDLEQLHL--PPPPPQSLAE
GGCSLPP..LDGED.LPDLDLLPPPP..PPAYLPP..DD.PPASMGA..ISDLEQL.L..PPPPPQ.L.E
RetrocopyGGCSLPP-TLDGEDPLPDLDLLPPPPATPPAYLPPPSDDEPPASMGAQFISDLEQLRLRSPPPPPQPLVE
ParentalGAPFQPQPGHLRPAEEKLPPPPAEPVGLPEREASTDICAFCHKTVSPRELAVEAMKRQYHAQCFTCRTCR
G..F.PQ.....PA.E.L.P.P.EPVG.P..EASTD...FC.KTV..R.LA.EA..RQYHA.CFTC..C.
RetrocopyGPQFKPQLNSQGPAKEELLPAPEEPVGFPKKEASTDVGVFCRKTVPLRALAMEAVNRQYHA*CFTCCNCC
ParentalRQLAGQSFYQKDGRPLCEPCYQDTLEKCGKCGGVVQEHIIRAL-GRAFHPACFTCVTCARCIGDESFALD
RQ..GQSFYQKDG.PLCEP.Y.DTLEKCGKCG.VV.EHIIRAL.GR.FHPACF..V.C..CI..E..ALD
RetrocopyRQPVGQSFYQKDGWPLCEPYYRDTLEKCGKCGEVVREHIIRAL<GRSFHPACFMSVICSHCIRKENLALD
ParentalNQNEVYCLDDFYRKF-APVCSICENPIIPRDGKDAFKIECMGRNFHENCYRCEDCRILLSVEPTDQGCYP
.QNEVY.L.DF.RKF.AP.C.ICE.PIIP.DG.DAF.I.CM.RN.H.NCYRCEDCRILLSV.P.DQGCY.
RetrocopySQNEVYYLEDFCRKFVAPMCHICESPIIPQDGTDAFIIKCMRRNLHKNCYRCEDCRILLSVKPADQGCYL
ParentalLDNRLFCKPCHVKRSAA
L...LFCKP.H.KRSA.
RetrocopyLNKHLFCKPSHMKRSAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_415 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000187251 retrocopy
Homo sapiens ENSG000001624582 retrocopies
Gorilla gorilla ENSGGOG000000151902 retrocopies
Macaca mulatta ENSMMUG000000322432 retrocopies
Nomascus leucogenys ENSNLEG000000076502 retrocopies
Pongo abelii ENSPPYG000000018372 retrocopies
Pan troglodytes ENSPTRG000000002082 retrocopies
Pteropus vampyrus ENSPVAG00000009000 1 retrocopy
retro_pvam_415 ,



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