RetrogeneDB ID: | retro_btau_1686 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 9:96312713..96313667(+) | ||
Located in intron of: | ENSBTAG00000005083 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS1 | ||
Ensembl ID: | ENSBTAG00000019703 | ||
Aliases: | None | ||
Description: | Ribose-phosphate pyrophosphokinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q2HJ58] |
Percent Identity: | 99.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMEL |
MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLME. | |
Retrocopy | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMER |
Parental | LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI | |
Retrocopy | LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
Parental | PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGD |
PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGD | |
Retrocopy | PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGD |
Parental | VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDK |
VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDK | |
Retrocopy | VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDK |
Parental | MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL | |
Retrocopy | MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 5 .91 RPM |
ERP005899_muscle | 0 .11 RPM | 17 .74 RPM |
SRP017611_brain | 0 .09 RPM | 15 .81 RPM |
SRP017611_kidney | 0 .06 RPM | 11 .44 RPM |
SRP017611_liver | 0 .15 RPM | 5 .44 RPM |
SRP030211_testis | 0 .23 RPM | 27 .94 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
DY105141 | 96312710 | 96312842 | 99.3 | 131 | 1 | 130 |