RetrogeneDB ID: | retro_fcat_394 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:110998718..110999672(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025017 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS1 | ||
Ensembl ID: | ENSFCAG00000012286 | ||
Aliases: | None | ||
Description: | phosphoribosyl pyrophosphate synthetase 1 [Source:HGNC Symbol;Acc:9462] |
Percent Identity: | 94.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMEL |
M.NIKIF.GSSHQDLSQKI.DRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEIND.LMEL | |
Retrocopy | MANIKIFGGSSHQDLSQKIVDRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDSLMEL |
Parental | LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
LIMI.ACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI | |
Retrocopy | LIMIDACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
Parental | PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGD |
PVDNLYAEPAVLKWIRENISEWRNCT.VSPDAGGAKR.TSIA.RL.V.FALIHKE.KKANEVDRMVLVGD | |
Retrocopy | PVDNLYAEPAVLKWIRENISEWRNCTVVSPDAGGAKRATSIAHRLHVAFALIHKEQKKANEVDRMVLVGD |
Parental | VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDK |
VKDRVAILVDDMADTCGTICHAADKLLSAGA.RVYAILTHGIFSGPA..RIN.ACFEAVVVTNTIPQE.K | |
Retrocopy | VKDRVAILVDDMADTCGTICHAADKLLSAGAARVYAILTHGIFSGPALARINSACFEAVVVTNTIPQEGK |
Parental | MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
MKHCSKIQ.IDISMILAEAI.RTHNGESVSYLFSHVPL | |
Retrocopy | MKHCSKIQAIDISMILAEAIKRTHNGESVSYLFSHVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 46 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .47 RPM |
SRP017611_liver | 0 .00 RPM | 20 .72 RPM |