Parental gene:

PRPS1, ENSPPYG00000020612

Aliases:None
Description:ribose-phosphate pyrophosphokinase 1 [Source:RefSeq peptide;Acc:NP_001124627]
Organism:Orangutan (Pongo abelii)
Coordinates:X:106587527..106610433(+)


>ENSPPYG00000020612
CGGAATATCAAAATCTTCAGCGGCAGTTCCCATCCAGGATTTATCTCAGAAAAATTGCTGACCCGCCTGGGCCTGGAGCT
AGGCAAGGTGGTGACTAAGAAATTCAGCAACCAGGAGACCTGTGTGGAAATTGGTGAAAGTGTACGTGGAGAGGATGTCT
ACATTGTTCAGAGTGGTTGTGGCGAAATCAATGACAATTTAATGGAGCTTTTGATCATGATTAATGCCTGCAAGATTGCT
TCAGCCAGCCGGGTTACTGCAGTCATCCCATGCTTCCCTTATGCCCGGCAGGATAAGAAAGATAAGAGCCGGGCGCCAAT
CTCAGCCAAGCTTGTTGCAAATATGCTATCTGTAGCAGGTGCAGATCATATTATTACCATGGACCTACATGCTTCTCAAA
TTCAGGGCTTTTTTGATATCCCAGTAGACAATTTGTATGCAGAGCCGGCTGTCCTAAAGTGGATAAGGGAGAATATCTCT
GAGTGGAGGAACTGCACTATTGTCTCACCTGATGCTGGTGGAGCTAAGAGAGTGACCTCCATTGCAGACAGGCTGAATGT
GGACTTTGCCTTGATTCACAAAGAACGGAAAAAGGCCAATGAAGTGGACCGCATGGTGCTTGTGGGAGATGTGAAGGATC
GGGTGGCCATCCTTGTGGATGACATGGCTGACACTTGTGGCACAATCTGCCATGCAGCTGACAAACTTCTCTCAGCTGGA
GCCACCAGAGTTTATGCCATCTTGACTCATGGAATCTTCTCCGGTCCTGCTATTTCTCGCATCAACAACGCATGCTTTGA
GGCAGTAGTAGTCACCAATACCATACCTCAGGAGGACAAGATGAAGCATTGCTCCAAAATACAGGTGATTGACATCTCTA
TGATCCTTGCGGAAGCCATCAGGAGAACTCACAATGGAGAATCCGTTTCTTACCTATTCAGCCATGTCCCTTTATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 62 .59 RPM
SRP007412_cerebellum 49 .86 RPM
SRP007412_heart 15 .20 RPM
SRP007412_kidney 25 .92 RPM
SRP007412_liver 19 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002784 ortholog_one2one 1 retrogene
retro_amel_22,
Bos taurus ENSBTAG00000019703 ortholog_one2one 3 retrogenes
retro_btau_157, retro_btau_1686, retro_btau_914,
Canis familiaris ENSCAFG00000017976 ortholog_one2one 1 retrogene
retro_cfam_1443,
Equus caballus ENSECAG00000024711 ortholog_one2one 2 retrogenes
retro_ecab_433, retro_ecab_73,
Felis catus ENSFCAG00000012286 ortholog_one2one 1 retrogene
retro_fcat_394,
Homo sapiens ENSG00000147224 ortholog_one2one 1 retrogene
retro_hsap_10,
Gorilla gorilla ENSGGOG00000012418 ortholog_one2one 1 retrogene
retro_ggor_2583,
Macropus eugenii ENSMEUG00000010071 ortholog_one2many 2 retrogenes
retro_meug_1612, retro_meug_443,
Microcebus murinus ENSMICG00000001929 ortholog_one2one 5 retrogenes
retro_mmur_1223, retro_mmur_1422, retro_mmur_514, retro_mmur_810, retro_mmur_90,
Myotis lucifugus ENSMLUG00000015498 ortholog_one2many 2 retrogenes
retro_mluc_107, retro_mluc_356,
Macaca mulatta ENSMMUG00000004674 ortholog_one2one 3 retrogenes
retro_mmul_1204, retro_mmul_1619, retro_mmul_305,
Mustela putorius furo ENSMPUG00000003793 ortholog_one2one 2 retrogenes
retro_mputfur_183, retro_mputfur_430,
Mus musculus ENSMUSG00000031432 ortholog_one2many 2 retrogenes
retro_mmus_19, retro_mmus_33,
Nomascus leucogenys ENSNLEG00000013911 ortholog_one2one 2 retrogenes
retro_nleu_1456, retro_nleu_217,
Oryctolagus cuniculus ENSOCUG00000012391 ortholog_one2many 3 retrogenes
retro_ocun_430, retro_ocun_867, retro_ocun_912,
Ochotona princeps ENSOPRG00000013140 ortholog_many2many 1 retrogene
retro_opri_704,
Pongo abelii ENSPPYG00000020125 within_species_paralog 1 retrogene
retro_pabe_3431,
Pan troglodytes ENSPTRG00000022163 ortholog_one2one 2 retrogenes
retro_ptro_2600, retro_ptro_2612,
Rattus norvegicus ENSRNOG00000025166 ortholog_one2many 2 retrogenes
retro_rnor_249, retro_rnor_341,
Sus scrofa ENSSSCG00000012560 ortholog_one2one 1 retrogene
retro_sscr_1068,
Ictidomys tridecemlineatus ENSSTOG00000007638 ortholog_one2many 2 retrogenes
retro_itri_11, retro_itri_173,
Tarsius syrichta ENSTSYG00000013556 ortholog_one2one 2 retrogenes
retro_tsyr_1063, retro_tsyr_1567,
Tursiops truncatus ENSTTRG00000003835 ortholog_one2one 2 retrogenes
retro_ttru_307, retro_ttru_485,
Vicugna pacos ENSVPAG00000000255 ortholog_one2one 1 retrogene
retro_vpac_274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_46 92.43 99.69
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2. retro_pabe_3061 53.01 57.55
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Download FASTA sequences of all ENSPPYG00000020612 retrocopies