RetrogeneDB ID: | retro_btau_1853 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:122038365..122039877(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF8 | ||
Ensembl ID: | ENSBTAG00000005796 | ||
Aliases: | DCAF8, H326, WDR42A | ||
Description: | DDB1- and CUL4-associated factor 8 [Source:RefSeq peptide;Acc:NP_001193348] |
Percent Identity: | 66.53 % |
Parental protein coverage: | 85.45 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | YSVNDESQVHDRSEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERE |
Y............E....E..P............Q.......ALE..V.SE.S.LP.PRW..L.ALRER. | |
Retrocopy | YQLGKPGKEGEVKEALAQEKWPQVQCREANQAQAQYLYAKDWALEERVASEISTLPNPRWKVLNALRERQ |
Parental | LGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE |
LGSSA.FVYEACGARVFVQ.F.LQ..L.GH..CVNT.HFNQ.GTWLA..SDDLKV..WDWV.RQPVL.FE | |
Retrocopy | LGSSAHFVYEACGARVFVQHFHLQYWLAGHNVCVNTVHFNQCGTWLATSSDDLKVILWDWVHRQPVLEFE |
Parental | SGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA |
SGH..NV.QAKFLP..GD.TLAMC..DGQ...AELSA...C..TK.VAQH.GASHKL.L.PDSP..FL.. | |
Retrocopy | SGHRNNV*QAKFLPHCGDTTLAMCGCDGQICIAELSALPHCGKTKCVAQHRGASHKLGLDPDSPFKFLTS |
Parental | GEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGV |
GEDA.VF.IDLRQ..PASK.VVT.EKEK.VGLY.IYVNPAN...FAVGG.DQFVRIYDQRKI....NNGV | |
Retrocopy | GEDAIVFAIDLRQGQPASKVVVTREKEKRVGLYSIYVNPANNYHFAVGG*DQFVRIYDQRKIN*SDNNGV |
Parental | LKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNF |
LKKFCPHHL.N...KA.ITCLVYSH.GTELLASYNDEDIYLF.SSH.DGAQY.KR.KGHRNNATVKGVNF | |
Retrocopy | LKKFCPHHLPNCDAKAHITCLVYSHNGTELLASYNDEDIYLFKSSHVDGAQYVKRHKGHRNNATVKGVNF |
Parental | YGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETS |
YGP.SEF..SGSDCGHIF.WEKSSCQI.Q.MEGDKGG..NC.E.HP.LPV.ATSGLD...KIW.PTA... | |
Retrocopy | YGPRSEFIMSGSDCGHIF-WEKSSCQIVQYMEGDKGGTINCIEAHPYLPVMATSGLDRNAKIWVPTAKVI |
Parental | TELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDT |
T.L.GL..VIK.NK..RD.D..HHT.LF.SHMLWFLMHHL.QR.H.......G.......SDES.S.SD. | |
Retrocopy | TCLAGLNSVIKRNKQGRDKDRKHHTHLFESHMLWFLMHHLTQRGHCPQ*GATGIEVVETNSDESSSTSDV |
Parental | SDEEEGPDRVQCMPS |
S.EEE..D.VQC..S | |
Retrocopy | SEEEENQDCVQCLLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 12 .26 RPM |
ERP005899_muscle | 0 .00 RPM | 29 .72 RPM |
SRP017611_brain | 0 .00 RPM | 76 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 93 .06 RPM |
SRP017611_liver | 0 .00 RPM | 35 .34 RPM |
SRP030211_testis | 0 .14 RPM | 55 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_223 |
Mus musculus | retro_mmus_111 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014293 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005796 | 1 retrocopy |
retro_btau_1853 ,
|
Canis familiaris | ENSCAFG00000031010 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005913 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012876 | 1 retrocopy | |
Felis catus | ENSFCAG00000003925 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013949 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026554 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011349 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007982 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006388 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001566 | 1 retrocopy |