Parental gene:

ENSCAFG00000031010

Aliases:DCAF8, WDR42A
Description:None
Organism:Dog (Canis familiaris)
Coordinates:38:21959932..21999598(+)


>ENSCAFG00000031010
ATGTCCAGCAAAGGGAGCAGCGCAGATGGCAAAACAGACTTAGCCAATGGAAGCCTGTCTAGCAGTCCAGAGGAGATGTC
TGGCGCTGAGGAGGGGAGGGAGACATCCTCAGGCATTGAAGTGGAAGCCTCGGACCTGAGCTTGAGCTTGACTGGGGATG
ATGGTGGCCCCAATCGCACCAGCACAGGAAGTCGGGGTACAGATACAGAGAGCTCAGGTGAAGACAAGGACTCTGACAGC
ATGGAGGACACTGGCCATTACTCCATCAATGATGAAAACCAAGTCCATGACCGCTCAGAGGAAGAAGAAGAAGAAGAGGA
GGAGGAGGAAGAGCATCCTCGGCGCCGTGTCCAGCGGAAGCGGGCCAACCGTGACCAGGACTCGTCAGATGATGAGCGGG
CCCTGGAGGACTGGGTGTCTTCAGAGACATCCGCCCTGCCCCGACCTCGCTGGCAAGCCCTTCCTGCCCTGCGGGAGCGG
GAGCTGGGTTCCAGTGCCCGTTTTGTATACGAGGCTTGTGGAGCAAGAGTCTTTGTGCAGCGTTTCCGCCTACAGCATGG
GCTTGAGGGCCATACTGGTTGTGTCAACACCCTGCACTTTAACCAGCGCGGCACCTGGCTGGCCAGTGGCAGCGATGACC
TGAAAGTGGTGGTTTGGGACTGGGTGCGGCGGCAGCCAGTACTGGACTTTGAGAGCGGCCACAAAAGCAATGTCTTCCAG
GCCAAGTTCCTTCCTAACAGTGGTGATTCCACCCTGGCCATGTGTGCCCGTGATGGGCAGGTGCGGGTAGCAGAGCTATC
TGCTACACAGTGTTGCAAGAATACGAAGCGTGTGGCCCAACACAAGGGAGCGTCCCACAAGTTGGCCCTGGAACCGGACT
CTCCCTGTACGTTTCTGTCCGCAGGTGAAGATGCAGTTGTCTTCACCATTGACCTCAGACAAGACCGGCCAGCTTCGAAA
CTGGTGGTGACAAAAGAAAAGGAGAAGAAAGTGGGGCTGTATACGATCTATGTGAATCCTGCCAATACCCACCAGTTTGC
AGTGGGTGGACGAGATCAGTTTGTAAGGATTTACGACCAGAGGAAGATTGATGAGAACGAGAACAATGGAGTGCTCAAGA
AATTCTGTCCTCATCACCTGGTGAACAGTGAGTCCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCACAGAG
CTCCTGGCCAGCTACAATGACGAAGACATTTACCTCTTCAACTCCTCTCACAGCGATGGGGCCCAGTATGTGAAGAGATA
CAAGGGCCACAGGAATAATGCCACAGTAAAAGGCGTCAATTTCTATGGCCCCAAGAGTGAGTTTGTGGTGAGCGGCAGTG
ACTGCGGGCACATCTTCCTTTGGGAGAAGTCCTCCTGCCAGATCGTTCAGTTCATGGAGGGGGACAAGGGAGGCGTGGTG
AACTGTCTCGAGCCCCACCCTCACCTGCCAGTGCTGGCAACCAGTGGCCTTGACCATGACGTCAAGATCTGGGCGCCCAC
AGCTGAAACTTCCACTGAACTGACAGGGCTGAAGGACGTGATTAAGAAGAACAAGCGGGAGCGGGATGAAGATAGCTTGC
ACCACACCGACCTGTTTGATAGCCACATGCTCTGGTTCCTCATGCATCACCTGAGACAGAGACGCCACCACCGGCGCTGG
CGAGAACCTGGGGTTGGGGCCACAGATGCGGACTCCGACGAGTCTCCCAGCTCCTCCGACACCTCGGACGAGGAGGAGGG
CCCCGACCGGGTGCAGTGCATGCCGTCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 92 .73 RPM
SRP017611_kidney 98 .40 RPM
SRP017611_liver 54 .17 RPM
SRP012049_cerebellum 95 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014293 ortholog_one2one 1 retrogene
retro_amel_47,
Bos taurus ENSBTAG00000005796 ortholog_one2one 1 retrogene
retro_btau_1853,
Callithrix jacchus ENSCJAG00000005913 ortholog_one2one 1 retrogene
retro_cjac_1322,
Echinops telfairi ENSETEG00000012876 ortholog_one2one 1 retrogene
retro_etel_654,
Felis catus ENSFCAG00000003925 ortholog_one2one 1 retrogene
retro_fcat_14,
Mustela putorius furo ENSMPUG00000013949 ortholog_one2one 1 retrogene
retro_mputfur_173,
Mus musculus ENSMUSG00000026554 possible_ortholog 1 retrogene
retro_mmus_111,
Otolemur garnettii ENSOGAG00000011349 ortholog_one2one 1 retrogene
retro_ogar_2113,
Pteropus vampyrus ENSPVAG00000007982 ortholog_one2one 1 retrogene
retro_pvam_1356,
Sus scrofa ENSSSCG00000006388 ortholog_one2one 1 retrogene
retro_sscr_88,
Tupaia belangeri ENSTBEG00000001566 ortholog_one2one 1 retrogene
retro_tbel_3644,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_223 81.21 83.05
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Download FASTA sequences of all ENSCAFG00000031010 retrocopies