RetrogeneDB ID: | retro_cfam_223 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:22924485..22926180(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000013603 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000031010 | ||
Aliases: | DCAF8, WDR42A | ||
Description: | None |
Percent Identity: | 81.21 % |
Parental protein coverage: | 83.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEEEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYE |
E.EE....EE.P...VQ...AN.DQ..SD..RALE.WV.SETS.LPRPRWQ...ALRER.LGSSARFVYE | |
Retrocopy | EAEERGAAEEQPQ--VQCNEANYDQYLSDEDRALEEWVTSETSTLPRPRWQIVSALRERQLGSSARFVYE |
Parental | ACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA |
ACGAR.FVQRF.L.H.LEGH.GCVNT.HFNQRGTWLAS.SDDLKV.VWDWVR..PVL.F.SGHK.NVFQA | |
Retrocopy | ACGARLFVQRFHLLHELEGHHGCVNTVHFNQRGTWLASSSDDLKVIVWDWVRKHPVLEFMSGHKNNVFQA |
Parental | KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTID |
KFLPN.GDSTLAMCARDGQVR.AELSA...CKNTKRVAQH.GASHKLALEPDSP..FL..GEDAVVF.ID | |
Retrocopy | KFLPNCGDSTLAMCARDGQVRIAELSAIPHCKNTKRVAQHRGASHKLALEPDSPFKFLTSGEDAVVFAID |
Parental | LRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLV |
LRQ.RPAS..VVTKE.EKKVGLYTI.VNPANT.QFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLV | |
Retrocopy | LRQGRPASRVVVTKEREKKVGLYTIHVNPANTYQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLV |
Parental | NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVS |
N.ESKANITCLVYSHDGTELLASYNDEDIYLFNSS..DGAQYVK.YKGHRNNAT.KGVNFYGP.SEFVVS | |
Retrocopy | NCESKANITCLVYSHDGTELLASYNDEDIYLFNSSDGDGAQYVKKYKGHRNNATIKGVNFYGPRSEFVVS |
Parental | GSDCGHIFLWEKSSCQIVQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVI |
GSDCGHIFLWEKSSCQIVQFMEGDKGG..NCLEPHP.LPV.ATSGLDH..KIWAPTAE..TELTGLK..I | |
Retrocopy | GSDCGHIFLWEKSSCQIVQFMEGDKGGTINCLEPHPYLPVMATSGLDHNAKIWAPTAEATTELTGLKNMI |
Parental | KKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRV |
K.NK.ERDED..HHTDLFDSHMLWFLM.HL.QR.HH.R.R.PGVG..DA.SDES...S..S.EEE..D.V | |
Retrocopy | KRNKQERDEDRMHHTDLFDSHMLWFLMRHLTQRGHHQRQRAPGVGVMDAESDESSTTSSSSEEEENQDHV |
Parental | QCMPS |
QC.PS | |
Retrocopy | QCLPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .17 RPM | 95 .46 RPM |
SRP017611_brain | 0 .08 RPM | 92 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 98 .40 RPM |
SRP017611_liver | 0 .00 RPM | 54 .17 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
DN342742 | 22925058 | 22925554 | 99.6 | 494 | 2 | 492 |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_1853 |
Mus musculus | retro_mmus_111 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014293 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005796 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000031010 | 1 retrocopy |
retro_cfam_223 ,
|
Callithrix jacchus | ENSCJAG00000005913 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012876 | 1 retrocopy | |
Felis catus | ENSFCAG00000003925 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013949 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026554 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011349 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007982 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006388 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001566 | 1 retrocopy |