RetrogeneDB ID: retro_mputfur_173

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896981.1:7824127..7825912(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018949
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000013949
• Aliases: None
• Description: None

Sequence

>retro_mputfur_173
ATGTCTGACAACGGGAGCAGCACAGATGGCCTACGAGACTCAGAAAGAAGAAGCCTGCTCAATAGCCCGGAGGAGCGGTC
TGAAGCGGCTGAGACGAGAGAGACATCTTCAGACACGGAGCTAAGCTTGAATTTGACCGCAGACGACGGCATCCTCTGCG
AGGCCACCCCAGAAAGTCAAGGCACAGACGCAGAAAGTTCAGCTGAAAACGTCAACTTCGAAAGCACCGAAGACTCGGAC
CAGTTCTTCATCTGTGAGGAAACCGTCTTCCCTTACGACCCGGAGGACGAGGAGGAGCAAGGAGCGGAGGAGGAGAGAGG
AGCGGCAGGAGGACACCCTCAGGTACAGTGCCCTGAAGCTAACCGTGATCAGTATTTATCAGATGAGGATCGGGCCCTGG
AGGAGTGGGTGTCCTCCGAAATATCTGCCCTGCCCCGCCCTCGCTGGCAAGTTGTTTCCGCTCTTCGTGAGCGGCAGCTG
GGTTCCAGTGCCCGCTTCGTTTACGAGGCCTGTGGCGCAAGAGTCTTTGTGCAGCGTTTCCACCTGCTCTATGAGCTTGA
AGGCCATCATGGTTGTGTCAATACTGTGCACTTCAACCAGCGTGGCACCTGGCTGGCCAGTAGCAGTGATGATCTTAAAG
TGATAGTGTGGGACTGGGTGCGTCAGCAGCCAGTACTGGAGTTTGCGAGTGGCCACAAAAATAATGTCTTTCAAGCCAAG
TTCCTTCCCAATTGTGGTGATTCCACCCTGGCCATGTGTGCCCGTGATGGGCAGATTCGCATAGCAGAGCTGTCTGCTTT
ACCACACTGCAAGAATACCAAGCGTGTGGCCCAGCACAGGGGAGCCTCCCATAAGTTGGCTCTGGAGCCAGACTCCCCTT
TTCAATTCCTAACTTCAGGCGAAGATGCAGTTGTTTTCGCCATTGACCTCAGACGAGGCCGGCCGGCTTCCAGAGTGGTG
GTAACCAAAGAGAGGGAGAAGAAGGTGGGGCTGTATGCCATCCATGTGAATCCTGCCAATACTTACCAGTTTGCAGTGGG
TGGAAGAGATCAGTTTGTAAGAATTTATGACCAGAGGAAAATTAATGAGAATGAGAATAATGGGGTACTTAAGAAATTCT
GTCCCCATCACCTAGTCAACTGTGATTCTAAAGCCAACATCACCTGCCTCGTGTACAGCCACGATGGCACAGAGCTCCTG
ACCAGTTATAATGATGAAGATATTTATCTCTTCAACTCCTCTGATGGAGATGGAGCCCAGTATGTTAAGAGATACAAGGG
TCACAGAAATAATGCCACAATCAAAGGTGTCAATTTCTATGGCCCCAGAAGTGAGTTCATCATGAGCGGCAGTGATTGTG
GTCACATCTTCTTCTGGGAAAAATCATCTCGCCAGATCATTCAGTTCATGGAGGGGGACAAGGGAGGCACCATAAACTGC
CTTGACCCCCATCCTTACCTACCTGTGCTGGCGACCAGTGGCCTAGATCATGATGCTAAGATCTGGGCACCCACAGCCAA
AGCTACCACTGAGCTGATTGGGTTAAAGAATATGATCAAGAGAAACAAGCGAGAACGAGATGAAGATCGCATACACCACA
CTGACCTGTTCGACAGCCACATGCTTTGGTTCCTCATGCGTCACCTGACACAGAGAGGTCATCGCCAGCACTGGGGAGCT
CCTGAAGCTGGAGCCGTGGATGCAGAATCAGATGCGTCTTCCAGTACCTCCAATTCATCTGAGGAAGACGAGAACCAAGA
CCGGGTGCAGTGCCTGCCGTCCTGA

Alignment

ORF - retro_mputfur_173 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.17 %
• Parental protein coverage: 95.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSGAEEGRETSSGIEVEA-SDLSLSLTGDDGGPNRTSTGSRGTDTESSGEDKDSDSMEDTGHYSINDENQ
          ....EE..E.....E......LSL.LT.DDG........S.GTD.ESS.E.....S.ED.....I..E..
Retrocopy LNSPEERSEAAETRETSSDTELSLNLTADDGILCEATPESQGTDAESSAENVNFESTEDSDQFFICEETV

Parental  VHDRSEEEEE---EEEEEEEHPRRRVQRKRASRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERE
          .....E.EEE...EEE.........VQ...A.RDQ..SD..RALE.WVSSE.SALPRPRWQ...ALRER.
Retrocopy FPYDPEDEEEQGAEEERGAAGGHPQVQCPEANRDQYLSDEDRALEEWVSSEISALPRPRWQVVSALRERQ

Parental  LGSSARFVYEACGARVFVQRFRLQHGLEGHNGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE
          LGSSARFVYEACGARVFVQRF.L...LEGH.GCVNT.HFNQRGTWLAS.SDDLKV.VWDWVR.QPVL.F.
Retrocopy LGSSARFVYEACGARVFVQRFHLLYELEGHHGCVNTVHFNQRGTWLASSSDDLKVIVWDWVRQQPVLEFA

Parental  SGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA
          SGHK.NVFQAKFLPN.GDSTLAMCARDGQ.R.AELSA...CKNTKRVAQH.GASHKLALEPDSP..FL..
Retrocopy SGHKNNVFQAKFLPNCGDSTLAMCARDGQIRIAELSALPHCKNTKRVAQHRGASHKLALEPDSPFQFLTS

Parental  GEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPASTHQFAVGGRDQFVRIYDQRKIDENENNGV
          GEDAVVF.IDLR..RPAS..VVTKE.EKKVGLY.I.VNPA.T.QFAVGGRDQFVRIYDQRKI.ENENNGV
Retrocopy GEDAVVFAIDLRRGRPASRVVVTKEREKKVGLYAIHVNPANTYQFAVGGRDQFVRIYDQRKINENENNGV

Parental  LKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSAHSDGAQYVKRYKGHRNNATVKGVNF
          LKKFCPHHLVN..SKANITCLVYSHDGTELL.SYNDEDIYLFNS...DGAQYVKRYKGHRNNAT.KGVNF
Retrocopy LKKFCPHHLVNCDSKANITCLVYSHDGTELLTSYNDEDIYLFNSSDGDGAQYVKRYKGHRNNATIKGVNF

Parental  YGPKSEFVVSGSDCGHIFLWEKSSCQIVQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETS
          YGP.SEF..SGSDCGHIF.WEKSS.QI.QFMEGDKGG..NCL.PHP.LPVLATSGLDHD.KIWAPTA...
Retrocopy YGPRSEFIMSGSDCGHIFFWEKSSRQIIQFMEGDKGGTINCLDPHPYLPVLATSGLDHDAKIWAPTAKAT

Parental  TELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVGAPDADSEESPSSSDT
          TEL.GLK..IK.NKRERDED..HHTDLFDSHMLWFLM.HL.QR.H...W..P..GA.DA.S..S.S.S..
Retrocopy TELIGLKNMIKRNKRERDEDRIHHTDLFDSHMLWFLMRHLTQRGHRQHWGAPEAGAVDAESDASSSTSNS

Parental  SDEDEGPDRVQCMPS
          S.EDE..DRVQC.PS
Retrocopy SEEDENQDRVQCLPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_173 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_173 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000014293	1 retrocopy	retro_amel_47,
Bos taurus	ENSBTAG00000005796	1 retrocopy	retro_btau_1853,
Canis familiaris	ENSCAFG00000031010	1 retrocopy	retro_cfam_223,
Callithrix jacchus	ENSCJAG00000005913	1 retrocopy	retro_cjac_1322,
Echinops telfairi	ENSETEG00000012876	1 retrocopy	retro_etel_654,
Felis catus	ENSFCAG00000003925	1 retrocopy	retro_fcat_14,
Mustela putorius furo	ENSMPUG00000013949	1 retrocopy	retro_mputfur_173 ,
Mus musculus	ENSMUSG00000026554	1 retrocopy	retro_mmus_111,
Otolemur garnettii	ENSOGAG00000011349	1 retrocopy	retro_ogar_2113,
Pteropus vampyrus	ENSPVAG00000007982	1 retrocopy	retro_pvam_1356,
Sus scrofa	ENSSSCG00000006388	1 retrocopy	retro_sscr_88,
Tupaia belangeri	ENSTBEG00000001566	1 retrocopy	retro_tbel_3644,