RetrogeneDB ID: | retro_btau_27 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 9:23792292..23793276(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000046593 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTSJ1 | ||
Ensembl ID: | ENSBTAG00000031829 | ||
Aliases: | None | ||
Description: | putative ribosomal RNA methyltransferase 1 [Source:RefSeq peptide;Acc:NP_001071402] |
Percent Identity: | 92.09 % |
Parental protein coverage: | 82.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGH |
MG..SKDKRDVYYRLAKE.GWRARSAFKLLQLDEEFQLFQGVTRA.DLCAAPGSWSQVLSQKIGGQGSGH | |
Retrocopy | MGWSSKDKRDVYYRLAKEKGWRARSAFKLLQLDEEFQLFQGVTRAIDLCAAPGSWSQVLSQKIGGQGSGH |
Parental | VVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAAL |
VVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFE.CP.DLVVCDGAPDVTGLH...EYMQAQLLLAAL | |
Retrocopy | VVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEDCPTDLVVCDGAPDVTGLH--VEYMQAQLLLAAL |
Parental | NIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPRSSRNSSIEAFAVCKGYDPPEGFLPDLT |
N.A.HVLKPGGCFV.KIFRGRDVTLIYSQLRVFFS.VLCAKPRSSRNSSIEAFAVCKGY.PPEGFLPDLT | |
Retrocopy | NLAMHVLKPGGCFVGKIFRGRDVTLIYSQLRVFFSRVLCAKPRSSRNSSIEAFAVCKGYNPPEGFLPDLT |
Parental | KPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSAYDSDRSYPLD |
KPLLDHSY..DFNQLDG..RIIVPFVT.GDLSAYDSD.SYPLD | |
Retrocopy | KPLLDHSY--DFNQLDGLSRIIVPFVTSGDLSAYDSDCSYPLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 20 .40 RPM |
ERP005899_muscle | 0 .00 RPM | 13 .67 RPM |
SRP017611_brain | 0 .14 RPM | 15 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .03 RPM |
SRP017611_liver | 0 .00 RPM | 21 .60 RPM |
SRP030211_testis | 17 .29 RPM | 8 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000031829 | 1 retrocopy |
retro_btau_27 ,
|
Canis familiaris | ENSCAFG00000015339 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001469 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000014092 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000003977 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008009 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016174 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007091 | 1 retrocopy |