RetrogeneDB ID: retro_mluc_1329

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429821:5508282..5509268(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026177
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: FTSJ1
• Ensembl ID: ENSMLUG00000003977
• Aliases: None
• Description: None

Sequence

>retro_mluc_1329
ATGGGACGGACGTCGAAGGACAAGCGGGATGTGTACTACCGCCTGGCCAAGGAGAATGGCTGGCGCGCCCGCAGTGCCTT
CAAGCTGCTACAGCTCAATGAGGAATTCCGACTCTTTGAAGGTGTGACACGGGCAGTCGATCTGTGTGCAGCCCCGGGCA
GCTGGAGCCAGGTGCTGAGCCAGAAGATCGGGAGTCCACAGGGGTCTGGCCACGTGGTGGCTGTGGACCTTCAAGCTATG
GCTCCGCTCCCAGGTGTGTTACAGATCCAGGGGGACATCACCCAGCTGTCCACTGCCGAGGACATCATCCGGCACTTTGA
GGGCTGCCCGGCGGACCTGGTGGTGTGCGACGGGGCTCCCGATGTAACCGGCCTCCATGAGGTTGATGAGTATCTGCAGG
CCCAGCTTCTCCTCGCCGCTCTGAACATCGCTGCACACGTCCTGAAGCCCGGGGGCTGCTTTGTAGCCAAGATCTTCCGA
GGCCGGGACGTGACGCTGATCTACAGCCAGCTGCATGTCTTCTTCTCCAGCGTGCTCTGTGCCAAGCCCAGGAGCAGCCG
GAAGGCCAGCAGCGAGGCCTTCGCTGTCTGTCAGGGTTATGACCCCCCTGAGGGCTTCCTGCCGGACCTGACCAAACCCT
TGCTGGACCCCTCTTACAATCGAGGCCTCAACCAATTAGATGGTCCCACCCGCAGCATTGTGCCATTTGTGACCTGTGGG
GACCTGAGCTCCTATGATTCGGACCTGAGTTACCCACTGGACCTGGAGGACGGCTCAGAGCCCAAGCACACGCCCCCCCA
CACCGTCCCCCATCTCGCCTCTGTGCCAGCAGGCCTGCACATCGAAGAAGAAGGGGCAGCTGGCCAGGGAGATCCATCCC
CAGGACTGCGCCATCAACACAGTGGACACATTGCCCCAGCCCCTGGCTGCCCCACAGCCACACCCTGATGGCCTCTGAGG
TGGACGTCAGTAAAATGAAATGTTCA

Alignment

ORF - retro_mluc_1329 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.59 %
• Parental protein coverage: 99.7 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLNEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGSPQGSG
          MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLNEEF.LF.GVTRAVDLCAAPGSWSQVLSQKIGSPQGSG
Retrocopy MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLNEEFRLFEGVTRAVDLCAAPGSWSQVLSQKIGSPQGSG

Parental  HVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIRHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAA
          HVVAVDLQAMAPLPGVLQIQGDITQLSTA..IIRHFEGCPADLVVCDGAPDVTGLH.VDEY.QAQLLLAA
Retrocopy HVVAVDLQAMAPLPGVLQIQGDITQLSTAEDIIRHFEGCPADLVVCDGAPDVTGLHEVDEYLQAQLLLAA

Parental  LNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSNVLCAKPRSSRNSSIATEAFAVCQGYDPPEGFLP
          LNIA.HVLKPGGCFVAKIFRGRDVTL.YSQL.VFFS.VLCAKPRSSR..S...EAFAVCQGYDPPEGFLP
Retrocopy LNIAAHVLKPGGCFVAKIFRGRDVTLIYSQLHVFFSSVLCAKPRSSRKAS--SEAFAVCQGYDPPEGFLP

Parental  DLTKPLLDHSYDPDLNQLDGPTRIIVPFVACGDLSSYDSDRSYPLDLEDGSEYKYTPP-TQPPISPPYQE
          DLTKPLLD.SY...LNQLDGPTR.IVPFV.CGDLSSYDSD.SYPLDLEDGSE.K.TPP.T..PISP..Q.
Retrocopy DLTKPLLDPSYNRGLNQLDGPTRSIVPFVTCGDLSSYDSDLSYPLDLEDGSEPKHTPP>TPSPISPLCQQ

Parental  ACTLKKKGRLAKEIRSQDCPINTVNTL-PQPLAAPRRHTLMASEVEDSGMNCS
          ACT.KKKG.LA.EI..QDC.INTV.TL.P.P...P..HTLMASEV..S.M.CS
Retrocopy ACTSKKKGQLAREIHPQDCAINTVDTL>PSPWL-PHSHTLMASEVDVSKMKCS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1329 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000031829	1 retrocopy	retro_btau_27,
Canis familiaris	ENSCAFG00000015339	1 retrocopy	retro_cfam_544,
Erinaceus europaeus	ENSEEUG00000001469	1 retrocopy	retro_eeur_222,
Echinops telfairi	ENSETEG00000014092	3 retrocopies	retro_etel_1697, retro_etel_1803, retro_etel_1928,
Myotis lucifugus	ENSMLUG00000003977	1 retrocopy	retro_mluc_1329 ,
Oryctolagus cuniculus	ENSOCUG00000008009	1 retrocopy	retro_ocun_870,
Otolemur garnettii	ENSOGAG00000016174	1 retrocopy	retro_ogar_180,
Sorex araneus	ENSSARG00000007091	1 retrocopy	retro_sara_26,