RetrogeneDB ID: | retro_btau_383 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:82521087..82521601(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDCBP | ||
Ensembl ID: | ENSBTAG00000019910 | ||
Aliases: | None | ||
Description: | syntenin-1 [Source:RefSeq peptide;Acc:NP_001068951] |
Percent Identity: | 79.19 % |
Parental protein coverage: | 57.05 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ITGGDIGIRRAEIKQGIREVILCKDQDGKI--GLRLKSIDNGIFVQLVQANSPSSLVGLRFGDQVLQING |
.TGGD.GI.RAEIK.GI.EVILCKD.D.KI..GLRLKSIDNG.FVQLVQA.S.SSLVGL.FG.QVLQI.. | |
Retrocopy | VTGGDMGICRAEIK*GIWEVILCKD*DRKIIIGLRLKSIDNGAFVQLVQA*SWSSLVGLWFGNQVLQIK- |
Parental | ENCAGWSSDRAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFVF-KNGKITSIVKDSSAARNGL |
ENC.GWSSD.A..VL.QAFGEKITMTIRDRPFERTIT..KDSTG.V.FVF......TSIVK.SSAARNGL | |
Retrocopy | ENCVGWSSDQALRVLTQAFGEKITMTIRDRPFERTITLNKDSTGRVNFVF>XXXXXTSIVKYSSAARNGL |
Parental | LTEHNICEVNGQNVIGLKDSQIADILSTAGNIV |
LTEHN.CEVNGQ.VIGLKDS.IAD.LSTAGNIV | |
Retrocopy | LTEHNTCEVNGQHVIGLKDSRIADVLSTAGNIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 60 .34 RPM |
ERP005899_muscle | 0 .00 RPM | 187 .24 RPM |
SRP017611_brain | 0 .00 RPM | 117 .53 RPM |
SRP017611_kidney | 0 .12 RPM | 203 .24 RPM |
SRP017611_liver | 0 .00 RPM | 41 .45 RPM |
SRP030211_testis | 0 .10 RPM | 93 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006161 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019910 | 2 retrocopies |
retro_btau_1035, retro_btau_383 ,
|
Canis familiaris | ENSCAFG00000007112 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003565 | 5 retrocopies | |
Equus caballus | ENSECAG00000015053 | 1 retrocopy | |
Homo sapiens | ENSG00000137575 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009019 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010757 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003968 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004807 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017296 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010339 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001408 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013462 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016432 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018612 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020277 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013965 | 1 retrocopy |