Parental gene:

SDCBP, ENSECAG00000015053

Aliases:None
Description:syndecan binding protein (syntenin) [Source:RefSeq peptide;Acc:NP_001229406]
Organism:Horse (Equus caballus)
Coordinates:9:25527611..25552559(-)


>ENSECAG00000015053
ATGTCTCTGTACCCATCTCTTGAAGACCTGAAGGTAGACAAAGTAATTCAGGCTCAGACTGCCTATTCTGCAAACCCTGC
CAACCCAGCAGTTTTGTCTGAAGCTTCTGCTCCTCCCGTCTCTCAAGATGGAAATCTCTATCCTAAGTTGTATCCGGAGC
TCTCTCAGTACATGGGCCTGAGTTTAAACGATGAAGAAATACGTGCAAATATGGCCATGATCCCTGGAGCACCAATTCAG
GGGCAATTGGTAGCAAGACCTTCCAGTATGAACTATATGGTGGCTCCTGTAACCGGCAATGATGTTGGGATTCGTAGAGC
CGAAATTAAGCAAGGGATTCGTGAAGTCATTCTGTGTAAGGATCAAGATGGAAAAATTGGGCTCCGGCTTAAATCAATAG
ATAACGGAGTATTTGTGCAGCTAGTCCAGGCAAATTCTCCAGCCTCGCTGGTTGGCCTGAGGTTTGGGGACCAAGTACTC
CAGATCAACGGGGAAAACTGTGCAGGCTGGAGCTCTGATAAATCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGAT
TACTATGACTATTCGTGACAGGCCCTTCGAACGGACAATTACCATGCATAAGGATAGTACTGGACATGTTGGTTTTATCT
TTAAAAATGGAAAAATAACATCCATAGTGAAAGATAGTTCTGCAGCCAGAAATGGTCTCCTCACAGAACATAACATCTGC
GAGATCAATGGACAGAATGTCATTGGGCTGAAGGACTCTCAAATTGCAGACATACTGTCAACATCTGGGACTGTAGTTAC
TATTACAATCATGCCTGCTTTTATCTTTGAACATATTATTAAACGGATGGCACCAAGCATTATGAAAAGCCTGATGGATC
ACACCATTCCTGAGGTTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 59 .05 RPM
SRP021940_embryo 28 .21 RPM
SRP021940_cerebellum 19 .89 RPM
SRP021940_testis 8 .18 RPM
SRP021940_placental_villous 66 .78 RPM
SRP021940_articular_cartilage 26 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006161 ortholog_one2one 1 retrogene
retro_amel_654,
Bos taurus ENSBTAG00000019910 ortholog_one2one 2 retrogenes
retro_btau_1035, retro_btau_383,
Canis familiaris ENSCAFG00000007112 ortholog_one2many 1 retrogene
retro_cfam_112,
Choloepus hoffmanni ENSCHOG00000003565 ortholog_one2one 5 retrogenes
retro_chof_1063, retro_chof_1151, retro_chof_1910, retro_chof_713, retro_chof_970,
Homo sapiens ENSG00000137575 ortholog_one2one 2 retrogenes
retro_hsap_3971, retro_hsap_4810,
Gorilla gorilla ENSGGOG00000009019 ortholog_one2one 2 retrogenes
retro_ggor_2666, retro_ggor_2995,
Loxodonta africana ENSLAFG00000010757 ortholog_one2one 1 retrogene
retro_lafr_1044,
Microcebus murinus ENSMICG00000003968 ortholog_one2one 1 retrogene
retro_mmur_170,
Myotis lucifugus ENSMLUG00000004807 ortholog_one2many 1 retrogene
retro_mluc_12,
Macaca mulatta ENSMMUG00000017296 ortholog_one2many 1 retrogene
retro_mmul_2564,
Mustela putorius furo ENSMPUG00000010339 ortholog_one2many 5 retrogenes
retro_mputfur_1055, retro_mputfur_1340, retro_mputfur_292, retro_mputfur_829, retro_mputfur_933,
Nomascus leucogenys ENSNLEG00000001408 ortholog_one2one 2 retrogenes
retro_nleu_2185, retro_nleu_2525,
Otolemur garnettii ENSOGAG00000013462 ortholog_one2one 1 retrogene
retro_ogar_3259,
Procavia capensis ENSPCAG00000016432 ortholog_one2one 1 retrogene
retro_pcap_186,
Pongo abelii ENSPPYG00000018612 ortholog_one2one 3 retrogenes
retro_pabe_3265, retro_pabe_3266, retro_pabe_3738,
Pan troglodytes ENSPTRG00000020277 ortholog_one2one 2 retrogenes
retro_ptro_2696, retro_ptro_3200,
Tupaia belangeri ENSTBEG00000013965 ortholog_one2one 1 retrogene
retro_tbel_2142,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_439 95.00 100.00
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Download FASTA sequences of all ENSECAG00000015053 retrocopies