Parental gene: | SDCBP, ENSCHOG00000003565 |
| Aliases: | None |
| Description: | syndecan binding protein (syntenin) [Source:HGNC Symbol;Acc:10662] |
| Organism: | Sloth (Choloepus hoffmanni) |
| Coordinates: | GeneScaffold_3734:4201..13702(+) |
>ENSCHOG00000003565
CTCTATCCTAAACTGTATCCGGAGCTCTCTCAGTACATGGGCCTGAGTCTAAATGAAGACGAAGTACGTGCAAATATGGT
CATGGTCTTTGGAGAACCAGTGCAGGGGCAGTTGGTTGTAAGACCTTCTAGTGTGAACTATATGGTGGCTCCTGTAACTG
GTAATGATGTTGGAATTCGAAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTTATTTTGTGTAAGGATCAAGATGGAAAA
ATTGGCCTCAGACTTAAATCAGTAGATAATGGTGTATTTATCCAGCTAGTCCAAGCTAATTCTCCAGCATCATTGGTTGG
TCTGAGATTTGGGGATCAAGTACTCCAGATTAACGGTGAAAACTGTGCAGGCTGGAGCTCTGATAAAGCACACAAAGTGC
TCAAACAGGCTTTTGGAGAAAAGATTACTATGACTATTCGTGACAGGCCCTTTGAACGGACTATTACCATGCATAAGGAT
AGTTCTGGACATGTTGGCTTTATCTTCAAAAATGGAAAAATAACATCCATAGTGAAAGACAGCTCTGCAGCCAGAAACGG
TCTTCTCACAGAACACAACATCTGTGAAATCAATGGACAGAACGTCATTGGTTTGAAGGACTCTCAAACTGCAGACATAC
TCTCAACATCTGGGACTGTAGTTACTATTACAATCATGCCAGCTTTTATCTTTGAACATATTATTAAACGGATGGCACCA
AGCATTATGAAAAGCCTGATGGATCACACCATTCCTGAAGTTTAA
CTCTATCCTAAACTGTATCCGGAGCTCTCTCAGTACATGGGCCTGAGTCTAAATGAAGACGAAGTACGTGCAAATATGGT
CATGGTCTTTGGAGAACCAGTGCAGGGGCAGTTGGTTGTAAGACCTTCTAGTGTGAACTATATGGTGGCTCCTGTAACTG
GTAATGATGTTGGAATTCGAAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTTATTTTGTGTAAGGATCAAGATGGAAAA
ATTGGCCTCAGACTTAAATCAGTAGATAATGGTGTATTTATCCAGCTAGTCCAAGCTAATTCTCCAGCATCATTGGTTGG
TCTGAGATTTGGGGATCAAGTACTCCAGATTAACGGTGAAAACTGTGCAGGCTGGAGCTCTGATAAAGCACACAAAGTGC
TCAAACAGGCTTTTGGAGAAAAGATTACTATGACTATTCGTGACAGGCCCTTTGAACGGACTATTACCATGCATAAGGAT
AGTTCTGGACATGTTGGCTTTATCTTCAAAAATGGAAAAATAACATCCATAGTGAAAGACAGCTCTGCAGCCAGAAACGG
TCTTCTCACAGAACACAACATCTGTGAAATCAATGGACAGAACGTCATTGGTTTGAAGGACTCTCAAACTGCAGACATAC
TCTCAACATCTGGGACTGTAGTTACTATTACAATCATGCCAGCTTTTATCTTTGAACATATTATTAAACGGATGGCACCA
AGCATTATGAAAAGCCTGATGGATCACACCATTCCTGAAGTTTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006161 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000019910 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000007112 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000015053 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000137575 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009019 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000010757 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000003968 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000004807 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017296 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010339 | ortholog_one2many | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001408 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000013462 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000016432 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018612 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000020277 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000013965 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_chof_713 | 84.73 | 51.18 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_chof_970 | 82.17 | 90.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_chof_1063 | 100.00 | 82.28 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_chof_1151 | 80.56 | 70.87 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_chof_1910 | 81.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCHOG00000003565 retrocopies