Parental gene:

SDCBP, ENSBTAG00000019910

Aliases:None
Description:syntenin-1 [Source:RefSeq peptide;Acc:NP_001068951]
Organism:Cow (Bos taurus)
Coordinates:14:26412823..26447192(+)


>ENSBTAG00000019910
ATGTCTCTGTACCCATCTCTTGAAGACCTGAAGGTAGACAAGGTGATTCAGGCTCAGACTGCATTTTCTGCAAACCCTGC
CAACCCAGCGATTTTATCTGAAGCCTCTGCTCCCGTCTCTCAAGATGGAAATCTCTATCCTAAGCTGTATCCGGAGCTCT
CTCAGTACATGGGCCTGAGTTTAAATGAAGAAGAAATACGTGCAAATATGGCCTTGGTCCCTGGAGCACCAAGTCAGGGG
CAGGTGGTGGCGCGGCCTTCCAGCATGAACCACATGGTGGCCCCTATCACTGGTGGCGACATTGGGATCCGCAGGGCAGA
GATCAAGCAAGGGATCCGGGAAGTCATCTTGTGTAAGGATCAAGACGGGAAGATTGGGCTCAGGCTGAAATCCATAGACA
ACGGTATATTTGTTCAGCTTGTCCAGGCCAATTCTCCGTCCTCCCTGGTGGGCCTGCGGTTTGGGGACCAGGTGCTGCAG
ATAAACGGCGAGAACTGTGCTGGCTGGAGCTCGGACCGGGCGCACAAGGTGCTCAAACAGGCTTTCGGAGAGAAGATCAC
CATGACCATTCGGGACAGGCCCTTTGAACGGACAATTACCATGCATAAGGACAGTACTGGACACGTTGGCTTTGTTTTTA
AAAATGGAAAAATCACATCCATTGTGAAAGACAGTTCTGCAGCTAGAAATGGTCTTCTCACGGAACATAACATCTGTGAG
GTCAACGGACAGAACGTCATCGGACTGAAGGACTCTCAGATCGCAGACATATTGTCCACAGCTGGAAATATAGTTACTAT
TACAATCATGCCTGCTTTTATCTTTGAACACATTATTAAACGGATGGCGCCAAGCATTATGAAAAGCTTGATGGATCACA
CCATTCCTGAGGTTTAG

Library Parental gene expression (RPM)
ERP005899_liver 60 .34 RPM
ERP005899_muscle 187 .24 RPM
SRP017611_brain 117 .53 RPM
SRP017611_kidney 203 .24 RPM
SRP017611_liver 41 .45 RPM
SRP030211_testis 93 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006161 ortholog_one2one 1 retrogene
retro_amel_654,
Canis familiaris ENSCAFG00000007112 ortholog_one2many 1 retrogene
retro_cfam_112,
Choloepus hoffmanni ENSCHOG00000003565 ortholog_one2one 5 retrogenes
retro_chof_1063, retro_chof_1151, retro_chof_1910, retro_chof_713, retro_chof_970,
Equus caballus ENSECAG00000015053 ortholog_one2one 1 retrogene
retro_ecab_439,
Homo sapiens ENSG00000137575 ortholog_one2one 2 retrogenes
retro_hsap_3971, retro_hsap_4810,
Gorilla gorilla ENSGGOG00000009019 ortholog_one2one 2 retrogenes
retro_ggor_2666, retro_ggor_2995,
Loxodonta africana ENSLAFG00000010757 ortholog_one2one 1 retrogene
retro_lafr_1044,
Microcebus murinus ENSMICG00000003968 ortholog_one2one 1 retrogene
retro_mmur_170,
Myotis lucifugus ENSMLUG00000004807 ortholog_one2many 1 retrogene
retro_mluc_12,
Macaca mulatta ENSMMUG00000017296 ortholog_one2many 1 retrogene
retro_mmul_2564,
Mustela putorius furo ENSMPUG00000010339 ortholog_one2many 5 retrogenes
retro_mputfur_1055, retro_mputfur_1340, retro_mputfur_292, retro_mputfur_829, retro_mputfur_933,
Nomascus leucogenys ENSNLEG00000001408 ortholog_one2one 2 retrogenes
retro_nleu_2185, retro_nleu_2525,
Otolemur garnettii ENSOGAG00000013462 ortholog_one2one 1 retrogene
retro_ogar_3259,
Procavia capensis ENSPCAG00000016432 ortholog_one2one 1 retrogene
retro_pcap_186,
Pongo abelii ENSPPYG00000018612 ortholog_one2one 3 retrogenes
retro_pabe_3265, retro_pabe_3266, retro_pabe_3738,
Pan troglodytes ENSPTRG00000020277 ortholog_one2one 2 retrogenes
retro_ptro_2696, retro_ptro_3200,
Tupaia belangeri ENSTBEG00000013965 ortholog_one2one 1 retrogene
retro_tbel_2142,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_383 79.19 57.05
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2. retro_btau_1035 93.00 100.00
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Download FASTA sequences of all ENSBTAG00000019910 retrocopies