RetrogeneDB ID: | retro_btau_542 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 14:37759678..37760219(+) | ||
Located in intron of: | ENSBTAG00000002062 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARF4 | ||
Ensembl ID: | ENSBTAG00000016069 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3SZF2] |
Percent Identity: | 91.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGG |
M.LTISSLFSRLFGK.QMRILMVGLDAAGKTTILYKLKLGEIVTTI.TIGFNVETVEYKNICF.VWD.GG | |
Retrocopy | MALTISSLFSRLFGKQQMRILMVGLDAAGKTTILYKLKLGEIVTTISTIGFNVETVEYKNICFKVWDIGG |
Parental | QDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMT |
QDKIRPLWRHYF.NTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISE.. | |
Retrocopy | QDKIRPLWRHYFENTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEIG |
Parental | DK-LGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR |
.....LQSL.NRTWYVQAT.ATQGT.LYEGLDWLSNELSKR | |
Retrocopy | QI>ISLQSLLNRTWYVQATWATQGTSLYEGLDWLSNELSKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 44 .63 RPM |
ERP005899_muscle | 0 .21 RPM | 121 .89 RPM |
SRP017611_brain | 0 .09 RPM | 43 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 94 .36 RPM |
SRP017611_liver | 0 .08 RPM | 100 .35 RPM |
SRP030211_testis | 0 .15 RPM | 67 .84 RPM |