RetrogeneDB ID: | retro_ocun_1868 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:1446520..1447025(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARF4 | ||
Ensembl ID: | ENSOCUG00000000824 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 4 [Source:HGNC Symbol;Acc:655] |
Percent Identity: | 58.99 % |
Parental protein coverage: | 97.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQ |
G.....L...LFGKK.M.ILM.GLD.AGKT....KLKLGEI.TT.....F..E.VE.KN...TVW.V.GQ | |
Retrocopy | GIFSAKLPRGLFGKKEMSILMMGLDTAGKT-MQFKLKLGEIATT----SFQCEDVE*KNVGITVWKVSGQ |
Parental | DKIRPL-WRHYFQNTQGLIFVVDSNDRERIQEGAEELRKILQEDELQDAVLLLFANKQDLPNAMAISE-M |
DKIRP..W.HY.QNTQGLIF.V.SNDRE......EE....L.EDELQD.V.L.FANKQDLP...A..E.. | |
Retrocopy | DKIRPR<WHHY*QNTQGLIFAVYSNDREHVNKTQEEFMRMLAEDELQDTVVLVFANKQDLPS--AMNE<I |
Parental | TDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL |
TDK.G..SL..R.WY..ATCAT...GLYEG..WLS..L | |
Retrocopy | TDKMGQHSLSHRNWYFRATCATSRGGLYEGPHWLSSQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 85 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 68 .52 RPM |
SRP017611_liver | 0 .00 RPM | 30 .37 RPM |