Parental gene:

ARF1, ENSBTAG00000007725

Aliases:None
Description:ADP-ribosylation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P84080]
Organism:Cow (Bos taurus)
Coordinates:7:2913859..2931918(-)


>ENSBTAG00000007725
ATGGGGAATATCTTTGCAAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATTCTCATGGTGGGCCTAGATGC
TGCGGGAAAGACCACCATCCTGTACAAACTGAAGCTGGGTGAAATTGTGACCACCATTCCCACTATTGGCTTCAACGTGG
AGACCGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCTCTGTGGCGCCAC
TACTTTCAAAACACACAAGGTCTCATCTTTGTGGTTGACAGCAATGACAGAGAGCGTGTGAATGAGGCCCGTGAGGAGCT
CATGAGGATGTTGGCAGAAGACGAGCTCAGGGACGCCGTTCTGCTCGTGTTTGCTAACAAACAGGACCTCCCTAATGCCA
TGAACGCGGCCGAGATCACGGACAAGCTGGGCCTGCACTCTCTGCGCCACAGGAACTGGTACATTCAGGCCACCTGTGCC
ACCAGTGGGGACGGGCTTTACGAGGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 78 .98 RPM
SRP017611_kidney 138 .64 RPM
SRP017611_liver 90 .31 RPM
ERP005899_muscle 186 .87 RPM
ERP005899_liver 30 .50 RPM
SRP030211_testis 134 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006785 within_species_paralog 1 retrogene
retro_btau_26,
Bos taurus ENSBTAG00000016069 within_species_paralog 1 retrogene
retro_btau_542,
Callithrix jacchus ENSCJAG00000016671 ortholog_one2one 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Ficedula albicollis ENSFALG00000001088 ortholog_one2one 1 retrogene
retro_falb_2,
Gallus gallus ENSGALG00000005393 ortholog_one2one 1 retrogene
retro_ggal_7,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000002792 possible_ortholog 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Oryctolagus cuniculus ENSOCUG00000023645 possible_ortholog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Otolemur garnettii ENSOGAG00000010974 ortholog_one2one 4 retrogenes
retro_ogar_2431, retro_ogar_295, retro_ogar_3353, retro_ogar_974,
Procavia capensis ENSPCAG00000014202 possible_ortholog 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pongo abelii ENSPPYG00000000148 ortholog_one2one 3 retrogenes
retro_pabe_3159, retro_pabe_849, retro_pabe_965,
Pelodiscus sinensis ENSPSIG00000009767 ortholog_one2one 1 retrogene
retro_psin_12,
Sarcophilus harrisii ENSSHAG00000014599 ortholog_one2one 3 retrogenes
retro_shar_106, retro_shar_462, retro_shar_725,
Ictidomys tridecemlineatus ENSSTOG00000009288 ortholog_one2one 3 retrogenes
retro_itri_1754, retro_itri_273, retro_itri_363,
Taeniopygia guttata ENSTGUG00000000233 ortholog_one2one 1 retrogene
retro_tgut_2,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Vicugna pacos ENSVPAG00000003224 ortholog_one2one 4 retrogenes
retro_vpac_281, retro_vpac_328, retro_vpac_6, retro_vpac_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1257 98.90 100.00
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2. retro_btau_1390 82.07 100.00
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Download FASTA sequences of all ENSBTAG00000007725 retrocopies