Parental gene:

ARF4, ENSOCUG00000000824

Aliases:None
Description:ADP-ribosylation factor 4 [Source:HGNC Symbol;Acc:655]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:9:24380642..24400701(-)


>ENSOCUG00000000824
ATGGGCCTCACTATCTCCTCTCTCTTCTCCCGCCTCTTCGGCAAGAAGCAGATGCGGATCTTGATGGTTGGATTGGATGC
TGCGGGCAAGACGACCATTCTGTATAAACTGAAGTTAGGGGAGATAGTCACCACCATTCCTACCATTGGTTTTAATGTGG
AAACAGTAGAATATAAGAACATTTGTTTCACAGTATGGGATGTTGGTGGTCAAGATAAAATTAGGCCTCTCTGGAGGCAT
TACTTCCAGAATACCCAGGGTCTTATTTTTGTGGTAGATAGCAATGACCGTGAAAGAATTCAGGAAGGAGCAGAAGAGCT
GCGGAAAATCCTTCAGGAAGACGAGCTTCAGGATGCAGTACTACTGCTTTTTGCAAACAAACAGGATTTGCCAAATGCTA
TGGCCATCAGTGAAATGACAGATAAATTAGGTCTTCAGTCTCTTCGTAACAGAACATGGTATGTTCAGGCCACTTGTGCT
ACACAAGGAACTGGTCTGTATGAGGGACTTGACTGGCTGTCAAATGAGCTTTCAAAACGTTAA

Library Parental gene expression (RPM)
SRP017611_liver 30 .37 RPM
SRP017611_kidney 68 .52 RPM
SRP017611_brain 85 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016069 ortholog_one2one 1 retrogene
retro_btau_542,
Choloepus hoffmanni ENSCHOG00000006427 ortholog_one2one 4 retrogenes
retro_chof_1024, retro_chof_1807, retro_chof_2368, retro_chof_36,
Ciona intestinalis ENSCING00000021790 ortholog_one2many 1 retrogene
retro_cint_10,
Callithrix jacchus ENSCJAG00000019922 ortholog_one2one 1 retrogene
retro_cjac_507,
Cavia porcellus ENSCPOG00000010334 ortholog_one2one 1 retrogene
retro_cpor_1261,
Dipodomys ordii ENSDORG00000004312 ortholog_one2one 1 retrogene
retro_dord_731,
Homo sapiens ENSG00000168374 ortholog_one2one 2 retrogenes
retro_hsap_1296, retro_hsap_4221,
Gorilla gorilla ENSGGOG00000000294 ortholog_one2one 1 retrogene
retro_ggor_1552,
Microcebus murinus ENSMICG00000002015 ortholog_one2one 3 retrogenes
retro_mmur_1528, retro_mmur_1558, retro_mmur_360,
Myotis lucifugus ENSMLUG00000007990 ortholog_one2one 1 retrogene
retro_mluc_2272,
Macaca mulatta ENSMMUG00000018617 ortholog_one2many 1 retrogene
retro_mmul_50,
Monodelphis domestica ENSMODG00000000185 ortholog_one2one 1 retrogene
retro_mdom_1538,
Nomascus leucogenys ENSNLEG00000007270 ortholog_one2one 3 retrogenes
retro_nleu_2106, retro_nleu_2703, retro_nleu_2704,
Oryctolagus cuniculus ENSOCUG00000014090 other_paralog 2 retrogenes
retro_ocun_1942, retro_ocun_751,
Oryctolagus cuniculus ENSOCUG00000023009 other_paralog 1 retrogene
retro_ocun_1404,
Oryctolagus cuniculus ENSOCUG00000023198 within_species_paralog 1 retrogene
retro_ocun_132,
Oryctolagus cuniculus ENSOCUG00000023645 within_species_paralog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Otolemur garnettii ENSOGAG00000012034 ortholog_one2one 4 retrogenes
retro_ogar_1407, retro_ogar_1501, retro_ogar_2963, retro_ogar_764,
Pongo abelii ENSPPYG00000013768 ortholog_one2one 3 retrogenes
retro_pabe_1013, retro_pabe_1075, retro_pabe_3451,
Pan troglodytes ENSPTRG00000015051 ortholog_one2one 2 retrogenes
retro_ptro_2866, retro_ptro_888,
Rattus norvegicus ENSRNOG00000012623 ortholog_one2one 2 retrogenes
retro_rnor_1036, retro_rnor_1884,
Sorex araneus ENSSARG00000009272 ortholog_one2one 1 retrogene
retro_sara_681,
Ictidomys tridecemlineatus ENSSTOG00000019470 ortholog_one2one 2 retrogenes
retro_itri_1439, retro_itri_1614,
Tupaia belangeri ENSTBEG00000007415 ortholog_one2many 1 retrogene
retro_tbel_2075,
Tarsius syrichta ENSTSYG00000009748 ortholog_one2one 1 retrogene
retro_tsyr_2059,
Tursiops truncatus ENSTTRG00000015381 ortholog_one2one 1 retrogene
retro_ttru_284,
Vicugna pacos ENSVPAG00000003891 ortholog_one2one 1 retrogene
retro_vpac_459,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_987 65.94 75.56
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2. retro_ocun_1007 64.91 93.89
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3. retro_ocun_1502 97.78 100.00
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4. retro_ocun_1868 58.99 97.78
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Download FASTA sequences of all ENSOCUG00000000824 retrocopies