RetrogeneDB ID: | retro_btau_561 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 14:45945494..45946385(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP4 | ||
Ensembl ID: | ENSBTAG00000007605 | ||
Aliases: | FKBP4, FKBP-4, FKBP-52 | ||
Description: | peptidyl-prolyl cis-trans isomerase FKBP4 [Source:RefSeq peptide;Acc:NP_001029494] |
Percent Identity: | 74.01 % |
Parental protein coverage: | 64.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | MTAEETKAAESGAQSAPLRLEGVDISPKQDEGVLKVIKREGTGMETPMIGDRVFVHYTGWLLDGTKFDSS |
M...E.KAA.S..Q.A...LEGVD.SPKQDEG.L..IK.EG.GME.PMIGDRV.VHY.GWLLDGTKF.SS | |
Retrocopy | MATKEMKAAKSREQLALQPLEGVDLSPKQDEGMLEFIKQEGPGMEMPMIGDRVSVHYRGWLLDGTKFHSS |
Parental | LDRKDRFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGLAGSPPKIPPNATLVFEVELFEFKGE |
LDRKDR.SFDLG.G.VIKAWD.AVATMK.GEVCHITCKPE.A.G.AGSPP.IPP.ATLVFEVEL.EFK.E | |
Retrocopy | LDRKDRVSFDLGRGKVIKAWDVAVATMKAGEVCHITCKPEHA*GSAGSPPRIPPKATLVFEVELLEFKEE |
Parental | DLTEEED-GGIIRRIRTR-GEGYAKP-NEGALVEVALEGYFKDQVFDRRELRFEVGEGESMD-LPCGLEK |
DLT.EED..GIIRR.R.R.GEGYAKP....A..EVALEGYF.DQ.FD.REL.FE.GEGESM..LPCGLEK | |
Retrocopy | DLTDEED<QGIIRRVRRR>GEGYAKP<SDSATLEVALEGYFEDQIFDPRELSFEAGEGESMH>LPCGLEK |
Parental | AIQRMEKGEHSIVYLKP-RYAFGSAGKEKFQIPPNAELKYEIHLKS-FEKAKESWEMSSEEKLEQSTIVK |
AIQ...K.EHSIVYL....YAF..AGKEKFQIPPNAEL.YEI..K..FE.A..S..MSS.E.LEQ.T.VK | |
Retrocopy | AIQCVDKREHSIVYLNT<LYAFSNAGKEKFQIPPNAELMYEI*HKN>FERANKSGAMSS-ETLEQRTVVK |
Parental | ERGTVYFKEGKYKQAVLQYKKIVS |
ERGTV.FKEGKYKQAVLQ.KK.VS | |
Retrocopy | ERGTVLFKEGKYKQAVLQCKKTVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 75 .84 RPM |
ERP005899_muscle | 0 .00 RPM | 228 .52 RPM |
SRP017611_brain | 0 .05 RPM | 132 .56 RPM |
SRP017611_kidney | 0 .12 RPM | 150 .43 RPM |
SRP017611_liver | 0 .00 RPM | 127 .84 RPM |
SRP030211_testis | 0 .09 RPM | 458 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007605 | 1 retrocopy |
retro_btau_561 ,
|
Bos taurus | ENSBTAG00000008303 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000018746 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011244 | 1 retrocopy | |
Homo sapiens | ENSG00000004478 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010471 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000007405 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002835 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004149 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000004529 | 3 retrocopies |