RetrogeneDB ID: | retro_nleu_2291 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397342.1:152997..154159(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP4 | ||
Ensembl ID: | ENSNLEG00000002835 | ||
Aliases: | None | ||
Description: | FK506 binding protein 4, 59kDa [Source:HGNC Symbol;Acc:3720] |
Percent Identity: | 85.9 % |
Parental protein coverage: | 99.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGS |
MPMIGD..FVHYTGWLL.GTKF.SSLD.KDK.SFDLGKGEVIKAWDIAIAT.KVGEVCHITCKPEYA.GS | |
Retrocopy | MPMIGD*AFVHYTGWLLEGTKFNSSLDCKDKLSFDLGKGEVIKAWDIAIATVKVGEVCHITCKPEYA*GS |
Parental | AGSPPKIPP-NATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDQLFD |
A.SPP.IPP.NATLVFEVELF..K.EDL.EEEDGGIIRRI.T.GEGYAKPNEGA.VEV.LEGYYKDQLFD | |
Retrocopy | ADSPPTIPP>NATLVFEVELF--KEEDLMEEEDGGIIRRIGTHGEGYAKPNEGAMVEVSLEGYYKDQLFD |
Parental | QRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLEPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK |
Q.ELRFE.GEGENLDLPYGLERAIQ..EKGE.S.VYL.PSYAFGSVGKEK.QIPPNA.LKYELHLKS.EK | |
Retrocopy | QQELRFEVGEGENLDLPYGLERAIQHLEKGEYSTVYLKPSYAFGSVGKEKTQIPPNAQLKYELHLKSLEK |
Parental | AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN |
AK.SWE.NSE.KLEQ.TIVKE.G.VYFKEGKYKQALLQ.KKIVSWLEYESSFS.EEAQK.QAL.L.S.LN | |
Retrocopy | AKDSWEKNSEQKLEQNTIVKEQGSVYFKEGKYKQALLQCKKIVSWLEYESSFSSEEAQKSQALQLPSPLN |
Parental | LAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA |
L.MC.LKLQAFSAAIESCNKALELDSNNEKGLF..GEAHLAVNDFELARADFQKVL.L.PNNKAA..QLA | |
Retrocopy | LVMCQLKLQAFSAAIESCNKALELDSNNEKGLFCWGEAHLAVNDFELARADFQKVLHLCPNNKAAGAQLA |
Parental | VCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDH |
VCQQ.IRRQLA..K..YANMFERLAEEENKAKAEA.SGDH | |
Retrocopy | VCQQQIRRQLAQKK*HYANMFERLAEEENKAKAEACSGDH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007605 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018746 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011244 | 1 retrocopy | |
Homo sapiens | ENSG00000004478 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010471 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000007405 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000800 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002835 | 1 retrocopy |
retro_nleu_2291 ,
|
Nomascus leucogenys | ENSNLEG00000009356 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004149 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000004529 | 3 retrocopies |