RetrogeneDB ID:

retro_ggor_2852

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:9:41176095..41177362(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000026267
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:FKBP4
Ensembl ID:ENSGGOG00000010471
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2852
AAGGTCATCAAGAGAGAGGGCACAGGTACAGAGATGCCCATGACTGGGGACCTAGTCTTTGTCCACTACACTGGCTGGCT
GTTAGAGGGCACAAAGTTTGACTCCAGTGTGGATCGCAAGGACAAATTCTCCTTTGACCTGGGAAAAGGGGAGGTCATCA
AGGCTTGGGACATTACCGTAGCAACCATGAAGGTGGGGGAGGTGGGCCACATCACCTGCAAACCAGAATATGCCTAGAGT
TCAGCAGACAGTCCTCCAACGATCCCCCCATAACGCCACGCTTGTGTTTGGGGTGGAATTGTTTAAGGAAGAAGATGTGA
CGGAAGAGGAAGATGGGGGAATCATCCGCAGAATAGGGACTCGCGGTGAAGGCTATGTCAAGCCCGATGAGGGCGCTATG
GTGGAGGTTGCGCTGGAAGGGTGCTGCAAGGACCAGCTCTTTGACCAACGGGCGCTCCGCTTTGAGGTTAGCGACGGGGA
GAACCTGGATCTGCCTTATGATCTGGAGAGGGCCATTCAGCACTTGGAGAAAGGAGAACATTCCACTGTGTACCTCAAGC
CCAGCTATGCTTTTGGCAGTGTTGGGAAGGAAAAGTTCCAAATCCCACCAAATGCCGAGCTGAAATATGAATTACATCTC
AAGAGTTTTGAAAAGGCCAAGGAATCTTGGGAGATGATTTCAGAAGAGAAGCCGGAACAGAACACCATAGTGAAAGAGCA
GGGCAGTGTGTACTTCAACAAAGGCAAATACAAGCAAGCTTTACTACAGTGTAAGAAGATTGTGTCCTGGCTGGAATATG
AGTCTAGTTTTTCCAATGAGGAAGCACAGAAGGCACAGGCGCTTCGACTGGCCTCTCACCTCGACCTGGCCATGTGTCAG
CTGAAACTACAGGCCTTCTCTGCTGCCATTGAAAGCTGTAACAGGGCCCTAGAACTGGACAGCAACAACGAGAAGGGCCC
CTTCCGCCGGGGAGAGGCCCACCTGGCAGTGAATGACTTTGAACTGGCATGGGCTGACTTCCAGAAGGTCCTGCAGCTCT
ACCCCAACAACAAAGCCGCCAGGGCCCAGCTGGCTGTGTGTCAGCAGCGGATCCACAGGCAGCTTGCCCGGAAGAAGTTC
TATGCCAAAATGTTTGAGAGGCTGGCTGAGGAGGAAAACAAGGCCAAGGCAGAGGCTTGCTCAGGAGACCATCCCACTGA
CACAGAGATGAAGGTGGAGTGGAAGAGCAACACGGCAGGGAGCTAGTCTCAGGTGGAGACAGAAGCA

ORF - retro_ggor_2852 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.62 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalQVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH
.VIKREGTGTEMPM.GD.VFVHYTGWLL.GTKFDSS.DRKDKFSFDLGKGEVIKAWDI..ATMKVGEV.H
RetrocopyKVIKREGTGTEMPMTGDLVFVHYTGWLLEGTKFDSSVDRKDKFSFDLGKGEVIKAWDITVATMKVGEVGH
ParentalITCKPEYAYGSAGSPPKIPP-NATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVA
ITCKPEYA..SA.SPP.IPP.NATLVF.VELF..K.ED.TEEEDGGIIRRI.TRGEGY.KP.EGA.VEVA
RetrocopyITCKPEYA*SSADSPPTIPP>NATLVFGVELF--KEEDVTEEEDGGIIRRIGTRGEGYVKPDEGAMVEVA
ParentalLEGYYKDKLFDQRELRFEIGEGENLDLPYGLERTIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAEL
LEG..KD.LFDQR.LRFE...GENLDLPY.LER.IQ..EKGEHS.VYLKPSYAFGSVGKEKFQIPPNAEL
RetrocopyLEGCCKDQLFDQRALRFEVSDGENLDLPYDLERAIQHLEKGEHSTVYLKPSYAFGSVGKEKFQIPPNAEL
ParentalKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK
KYELHLKSFEKAKESWEM.SEEK.EQ.TIVKE.G.VYF..GKYKQALLQ.KKIVSWLEYESSFSNEEAQK
RetrocopyKYELHLKSFEKAKESWEMISEEKPEQNTIVKEQGSVYFNKGKYKQALLQCKKIVSWLEYESSFSNEEAQK
ParentalAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLY
AQALRLASHL.LAMC.LKLQAFSAAIESCN.ALELDSNNEKG.FRRGEAHLAVNDFELA.ADFQKVLQLY
RetrocopyAQALRLASHLDLAMCQLKLQAFSAAIESCNRALELDSNNEKGPFRRGEAHLAVNDFELAWADFQKVLQLY
ParentalPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQS
PNNKAA..QLAVCQQRI.RQLAR.KK.YA.MFERLAEEENKAKAEA.SGDHPTDTEMK.E.KSNTAGS.S
RetrocopyPNNKAARAQLAVCQQRIHRQLAR-KKFYAKMFERLAEEENKAKAEACSGDHPTDTEMKVEWKSNTAGS*S
ParentalQVETEA
QVETEA
RetrocopyQVETEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 193 .45 RPM
SRP007412_cerebellum 0 .00 RPM 224 .65 RPM
SRP007412_heart 0 .00 RPM 53 .06 RPM
SRP007412_kidney 0 .00 RPM 119 .15 RPM
SRP007412_liver 0 .00 RPM 74 .86 RPM
SRP007412_testis 0 .00 RPM 370 .27 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2852 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2852 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 10 parental genes, and 24 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000076051 retrocopy
Callithrix jacchus ENSCJAG000000187461 retrocopy
Dasypus novemcinctus ENSDNOG000000112441 retrocopy
Homo sapiens ENSG000000044785 retrocopies
Gorilla gorilla ENSGGOG000000017293 retrocopies
Gorilla gorilla ENSGGOG00000010471 4 retrocopies
Macaca mulatta ENSMMUG000000074051 retrocopy
Nomascus leucogenys ENSNLEG000000028351 retrocopy
Pongo abelii ENSPPYG000000041494 retrocopies
Pan troglodytes ENSPTRG000000045293 retrocopies



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