RetrogeneDB ID: | retro_pabe_3383 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:20898852..20899654(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP4 | ||
Ensembl ID: | ENSPPYG00000004149 | ||
Aliases: | None | ||
Description: | FK506 binding protein 4, 59kDa [Source:HGNC Symbol;Acc:3720] |
Percent Identity: | 82.72 % |
Parental protein coverage: | 58.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKP |
EGTGTEMPM.GD.VFVHYTGWLL.GTKFDSS.D.KD..SFDLGKGEVIKAWDIA.A.MKVGEVCHITCKP | |
Retrocopy | EGTGTEMPMTGDLVFVHYTGWLLEGTKFDSSVDGKDRLSFDLGKGEVIKAWDIAVAIMKVGEVCHITCKP |
Parental | EYAYGSAGSPPKIPP-NATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY |
EYA.GSAGSPP..PP.NATLVFEVELF..K.EDLTEEEDGGIIRRI.TRGEGY.KP.EG..VEVAL.G.. | |
Retrocopy | EYA*GSAGSPPTVPP>NATLVFEVELF--KEEDLTEEEDGGIIRRIGTRGEGYVKPDEGTMVEVALKGCC |
Parental | KDQLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELH |
KDQLFDQR.LRFE..E.ENLDLPY.LERAIQ..EKGEHS.VYL.PSYAFGSVGKEKFQIP.NAELKYEL. | |
Retrocopy | KDQLFDQRALRFEVSERENLDLPYDLERAIQHLEKGEHSTVYLRPSYAFGSVGKEKFQIPSNAELKYELY |
Parental | LKSFEKAKESWEMNSE-EKLEQSTIVKERGTVYFKEGKYKQ-ALLQ-YKKIV-SWLEYESSF |
LKSFEKAKESWEM.SE.EKLEQ.TIVKE.G.VYFKEG.YKQ.ALLQ..KKIV...LEYESSF | |
Retrocopy | LKSFEKAKESWEMISE>EKLEQNTIVKEQGRVYFKEGRYKQ>ALLQ>VKKIVFLGLEYESSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 187 .60 RPM |
SRP007412_cerebellum | 0 .00 RPM | 173 .65 RPM |
SRP007412_heart | 0 .00 RPM | 50 .39 RPM |
SRP007412_kidney | 0 .00 RPM | 135 .54 RPM |
SRP007412_liver | 0 .00 RPM | 85 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007605 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018746 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011244 | 1 retrocopy | |
Homo sapiens | ENSG00000004478 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010471 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000007405 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002835 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004149 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000010852 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000012604 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004529 | 3 retrocopies |