RetrogeneDB ID: | retro_cfam_1152 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:35234409..35234810(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOC | ||
Ensembl ID: | ENSCAFG00000013413 | ||
Aliases: | None | ||
Description: | ras homolog family member C [Source:HGNC Symbol;Acc:669] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 65.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | APAMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD |
APAMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV.VPTVFENY..DIEVDGKQ.ELALWDTAGQEDYD | |
Retrocopy | APAMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVCVPTVFENYVTDIEVDGKQGELALWDTAGQEDYD |
Parental | RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR-QDEHTRREL |
RLRPLSYPDTDVILMCFSI.SPDSLENIPEKWTPEVKH.CPNVPI..VGN...L..QDE...R.. | |
Retrocopy | RLRPLSYPDTDVILMCFSINSPDSLENIPEKWTPEVKHSCPNVPITAVGNRRELA<QDEAGARAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .71 RPM | 9 .20 RPM |
SRP017611_brain | 0 .32 RPM | 9 .21 RPM |
SRP017611_kidney | 6 .67 RPM | 147 .39 RPM |
SRP017611_liver | 1 .52 RPM | 38 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014299 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013413 | 1 retrocopy |
retro_cfam_1152 ,
|
Canis familiaris | ENSCAFG00000023066 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013657 | 2 retrocopies | |
Equus caballus | ENSECAG00000010174 | 3 retrocopies | |
Ficedula albicollis | ENSFALG00000000736 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002741 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004807 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000981 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027678 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001981 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000017533 | 1 retrocopy | |
Tetraodon nigroviridis | ENSTNIG00000015041 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000006898 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000008103 | 1 retrocopy |