RetrogeneDB ID: | retro_cfam_1652 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:32922272..32922716(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSCAFG00000023066 | ||
Aliases: | RHOA, RHO1 | ||
Description: | Canis lupus familiaris ras homolog gene family, member A (RHOA), mRNA. [Source:RefSeq mRNA;Acc:NM_001003273] |
Percent Identity: | 97.3 % |
Parental protein coverage: | 76.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD |
VIVGDGACGKTCLLI.FSKDQFPEVY.PTVFENYVADIEVDGKQVELALWD.AGQEDYDRLRPLSYP.TD | |
Retrocopy | VIVGDGACGKTCLLIDFSKDQFPEVYEPTVFENYVADIEVDGKQVELALWDAAGQEDYDRLRPLSYPGTD |
Parental | VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA |
VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA | |
Retrocopy | VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA |
Parental | NRIGAFGY |
NRIGAFGY | |
Retrocopy | NRIGAFGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .13 RPM | 145 .27 RPM |
SRP017611_brain | 0 .08 RPM | 78 .60 RPM |
SRP017611_kidney | 0 .26 RPM | 202 .21 RPM |
SRP017611_liver | 0 .07 RPM | 45 .97 RPM |