RetrogeneDB ID: | retro_cfam_186 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:15439142..15439733(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000003850 | |
Aliases: | RHOB, RHO | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSCAFG00000023066 | ||
Aliases: | RHOA, RHO1 | ||
Description: | Canis lupus familiaris ras homolog gene family, member A (RHOA), mRNA. [Source:RefSeq mRNA;Acc:NM_001003273] |
Percent Identity: | 85.34 % |
Parental protein coverage: | 98.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
MAAIRKKLV.VGDGACGKTCLLIVFSKD.FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR | |
Retrocopy | MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
Parental | PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK |
PLSYPDTDVILMCFS.DSPDSLENIPEKW.PEVKHFCPNVPIILV.NKKDLR.DEH.R.ELA.MKQEPV. | |
Retrocopy | PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVR |
Parental | PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCL |
...GR.MA.RI.A..Y.ECSAKTK.GVREVFE.ATRAALQ.R.G....GC. | |
Retrocopy | TDDGRAMAVRIQAYEYLECSAKTKEGVREVFETATRAALQKRYG-SQNGCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 68 .16 RPM | 145 .27 RPM |
SRP017611_brain | 41 .92 RPM | 78 .60 RPM |
SRP017611_kidney | 26 .35 RPM | 202 .21 RPM |
SRP017611_liver | 38 .94 RPM | 45 .97 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_108 |
Pan troglodytes | retro_ptro_10 |
Gorilla gorilla | retro_ggor_18 |
Macaca mulatta | retro_mmul_977 |
Bos taurus | retro_btau_206 |
Equus caballus | retro_ecab_112 |