RetrogeneDB ID: | retro_cfam_1577 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 35:1345229..1345516(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000009194 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DYNLRB1 | ||
Ensembl ID: | ENSCAFG00000007547 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris dynein, light chain, roadblock-type 1 (DYNLRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252419] |
Percent Identity: | 86.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAEVEETLKR-LQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVREIDPQNDLTFL |
MAE.EETLK..LQSQKGVQGIIV.NTEGI.IKS.MDNPTTTQYANLMH..ILKARSTV.E.DPQNDLTFL | |
Retrocopy | MAEAEETLKD<LQSQKGVQGIIVGNTEGIAIKSAMDNPTTTQYANLMHDSILKARSTVHEVDPQNDLTFL |
Parental | RIRSKKNEIMVAPDKDYFLIVIQNPTE |
RI.SKK.EIMVAPDKDYF.IVIQNPTE | |
Retrocopy | RIHSKKIEIMVAPDKDYFPIVIQNPTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 100 .04 RPM |
SRP017611_brain | 0 .00 RPM | 64 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 62 .93 RPM |
SRP017611_liver | 0 .00 RPM | 16 .75 RPM |