RetrogeneDB ID: | retro_cfam_1726 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:24808534..24808893(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL5 | ||
Ensembl ID: | ENSCAFG00000012438 | ||
Aliases: | None | ||
Description: | methyltransferase like 5 [Source:HGNC Symbol;Acc:25006] |
Percent Identity: | 54.92 % |
Parental protein coverage: | 57.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FNRNVEEFELTNVDMVQCDVRS-LSNRMSKSFDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHK |
.......F.LTN.DMVQC.....L....S.....VI.N.PFG..N.KG.D..FLKT.LEM.RTA.Y.L.. | |
Retrocopy | YSTGTSQFALTNADMVQCGCAYYLTECPSHFIRSVIINLPFGNENKKGIDKSFLKTSLEMTRTAAY-LYE |
Parental | SSTRD-HIQKKATEWKIKIDIIAELRYDLPASYKFHKKKSVDIEVDLIRFSF |
.S....HI.KKATEWKIKI.....L.Y.LPASY.F.KKKSVD.EV.LI.FSF | |
Retrocopy | FSMEN<HIHKKATEWKIKINTTPKLQYNLPASY*FLKKKSVDMEVGLIWFSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 26 .17 RPM |
SRP017611_brain | 0 .00 RPM | 13 .34 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .43 RPM |
SRP017611_liver | 0 .00 RPM | 7 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012438 | 1 retrocopy |
retro_cfam_1726 ,
|
Callithrix jacchus | ENSCJAG00000006777 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013460 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022484 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018044 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000002154 | 2 retrocopies |