RetrogeneDB ID: | retro_dnov_773 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_106159:4233..4632(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL5 | ||
Ensembl ID: | ENSDNOG00000013460 | ||
Aliases: | None | ||
Description: | methyltransferase like 5 [Source:HGNC Symbol;Acc:25006] |
Percent Identity: | 72.18 % |
Parental protein coverage: | 63.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | CVGFDIDEDALEIFNRNVEEFELTNIDMVLSDVCSLS-KMSKSFDTVIMNPPFGTKNNKGIDIAFLKTAL |
C.G.DIDEDALEIFNRNVEEFELTNIDMVL..V.SLS.KM.K.FDTVI.N..FG.KNNKG.D.AFLKTA. | |
Retrocopy | CMGDDIDEDALEIFNRNVEEFELTNIDMVLCTVGSLSNKMFKLFDTVITNSSFGAKNNKGTDMAFLKTA* |
Parental | EMARTAVYSLHKSSTREHIQKKAAEWKIKIDIIAELXXXXXXXXXXXXXXXVDIEVDLIRFSF |
EMAR.AVY.LHKSSTREHIQ.K.AEWKIK.DIIAEL...............VDIEVDLI..SF | |
Retrocopy | EMARPAVYTLHKSSTREHIQMKVAEWKIKVDIIAELRYDLLASYKFHKKKSVDIEVDLIQLSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 17 .11 RPM |
SRP012922_cerebellum | 0 .82 RPM | 21 .31 RPM |
SRP012922_heart | 0 .93 RPM | 16 .71 RPM |
SRP012922_kidney | 1 .37 RPM | 24 .09 RPM |
SRP012922_liver | 0 .31 RPM | 8 .98 RPM |
SRP012922_lung | 1 .83 RPM | 23 .21 RPM |
SRP012922_quadricep_muscle | 0 .52 RPM | 12 .12 RPM |
SRP012922_spleen | 0 .92 RPM | 25 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012438 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006777 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000003343 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013460 | 2 retrocopies |
retro_dnov_1043, retro_dnov_773 ,
|
Homo sapiens | ENSG00000138382 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022484 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018044 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023054 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005018 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010405 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012916 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012621 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000002154 | 2 retrocopies |