RetrogeneDB ID:

retro_dnov_773

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_106159:4233..4632(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:METTL5
Ensembl ID:ENSDNOG00000013460
Aliases:None
Description:methyltransferase like 5 [Source:HGNC Symbol;Acc:25006]


Retrocopy-Parental alignment summary:






>retro_dnov_773
TGTATGGGAGATGACATAGATGAAGATGCATTGGAAATATTTAATAGGAATGTGGAAGAGTTTGAGTTAACAAATATTGA
CATGGTTCTATGTACTGTGGGCTCATTATCTAACAAAATGTTCAAGCTGTTTGATACAGTAATTACGAATTCTTCCTTTG
GAGCAAAAAATAATAAAGGGACAGATATGGCTTTTCTGAAGACTGCTTAGGAAATGGCAAGACCAGCAGTATATACTTTA
CATAAATCCTCAACTAGAGAACATATTCAAATGAAAGTTGCAGAATGGAAAATTAAGGTAGATATCATTGCAGAGCTGAG
ATATGACCTTCTAGCATCATACAAATTTCATAAAAAGAAATCAGTGGACATTGAAGTGGACCTAATTCAACTTTCTTTT

ORF - retro_dnov_773 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.18 %
Parental protein coverage: 63.46 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalCVGFDIDEDALEIFNRNVEEFELTNIDMVLSDVCSLS-KMSKSFDTVIMNPPFGTKNNKGIDIAFLKTAL
C.G.DIDEDALEIFNRNVEEFELTNIDMVL..V.SLS.KM.K.FDTVI.N..FG.KNNKG.D.AFLKTA.
RetrocopyCMGDDIDEDALEIFNRNVEEFELTNIDMVLCTVGSLSNKMFKLFDTVITNSSFGAKNNKGTDMAFLKTA*
ParentalEMARTAVYSLHKSSTREHIQKKAAEWKIKIDIIAELXXXXXXXXXXXXXXXVDIEVDLIRFSF
EMAR.AVY.LHKSSTREHIQ.K.AEWKIK.DIIAEL...............VDIEVDLI..SF
RetrocopyEMARPAVYTLHKSSTREHIQMKVAEWKIKVDIIAELRYDLLASYKFHKKKSVDIEVDLIQLSF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 0 .19 RPM 17 .11 RPM
SRP012922_cerebellum 0 .82 RPM 21 .31 RPM
SRP012922_heart 0 .93 RPM 16 .71 RPM
SRP012922_kidney 1 .37 RPM 24 .09 RPM
SRP012922_liver 0 .31 RPM 8 .98 RPM
SRP012922_lung 1 .83 RPM 23 .21 RPM
SRP012922_quadricep_muscle 0 .52 RPM 12 .12 RPM
SRP012922_spleen 0 .92 RPM 25 .98 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_773 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000124381 retrocopy
Callithrix jacchus ENSCJAG000000067772 retrocopies
Cavia porcellus ENSCPOG000000033431 retrocopy
Dasypus novemcinctus ENSDNOG00000013460 2 retrocopies
retro_dnov_1043, retro_dnov_773 ,
Homo sapiens ENSG000001383822 retrocopies
Gorilla gorilla ENSGGOG000000224842 retrocopies
Loxodonta africana ENSLAFG000000180442 retrocopies
Macaca mulatta ENSMMUG000000230543 retrocopies
Nomascus leucogenys ENSNLEG000000050184 retrocopies
Oryctolagus cuniculus ENSOCUG000000104051 retrocopy
Pongo abelii ENSPPYG000000129162 retrocopies
Pan troglodytes ENSPTRG000000126213 retrocopies
Tursiops truncatus ENSTTRG000000021542 retrocopies



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