RetrogeneDB ID:

retro_ggor_2032

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:63420570..63421200(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000138382
Ensembl ID:ENSGGOG00000022484
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2032
GTGAAGAAATTAAGGCTTAAAGGCCTACAGTGTCAGCTGCAATAAGTGGATGGATTCAAATAGCCGGGCTACTTCTAGAA
CAGTACCCAGCCAGCGTGTATATTTAAGCCTGTGTTCTCTATATAATCCACTACACATGGGATGACATTGAAATTAAAGT
GGTTGCAGATCTAGAACATGGTGGTAGAGTGCTTAGCATCCAAGCTACAATGGTAGCAGCAGGGTTGTGGTTGTATTGGA
CATAGATGAAGATGCACTGAAAATATTTAATAGGAATGTGGAAGAGTTTGACTTAGCAAATGTTGTCATGGTTTACTGTG
ATATGTGCTCATAATTTAAGAGAATGTCCAAGTCATTAGATACAGTAATCATGAATCCTCACTTTGGGACCAAAAATAAT
AAAGTTATATTCAAAGATATAACTTCTCTGAAGACTGCTTCAGAAATGGCAAGGACAGTCATACATATTTTGCACAAATC
CTCAACTACAAAACATGCTCAAAAGAAAGTTGCAGAATAGAAAATCGAGATAAATATTATTACAGAGTTGAGATATGACC
TGCCAGCATCATGAAATTGTCATAAAAAGAGATCAGTGGATGTTGAAGTGAACTAATTCAGTTTTCTTTT

ORF - retro_ggor_2032 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.49 %
Parental protein coverage: 100. %
Number of stop codons detected: 6
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMKKVRLKELESRLQQVDGFEKPK-LLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCGVLSIGT
.KK.RLK.L...LQ.VDGF..P..LLLEQYP....I.AC.LY.IH.T.DDIE.KVVADL..G..VLSI..
RetrocopyVKKLRLKGLQCQLQ*VDGFK*PG<LLLEQYPASVYI*ACVLYIIHYTWDDIEIKVVADLEHGGRVLSIQA
ParentalAMLGAGL-CVGFDIDEDALEIFNRNAEEFELTNIDMVQCDVCLLSNRMSKSFDTVIMNPPFGTKNNKGT-
.M..AGL..V..DIDEDAL.IFNRN.EEF.L.N..MV.CD.C....RMSKS.DTVIMNP.FGTKNNK...
RetrocopyTMVAAGL<VVVLDIDEDALKIFNRNVEEFDLANVVMVYCDMCS*FKRMSKSLDTVIMNPHFGTKNNKVIF
Parental-DMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKIKIDIIAELRYDLPASYKFHKKKSVDIEV-DLI
.D...LKTA.EMART....LHKSST..H.QKK.AE.KI.I.II.ELRYDLPAS...HKK.SVD.EV..LI
RetrocopyKDITSLKTASEMARTVIHILHKSSTTKHAQKKVAE*KIEINIITELRYDLPAS*NCHKKRSVDVEV<ELI
ParentalRFSF
.FSF
RetrocopyQFSF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 5 .61 RPM
SRP007412_cerebellum 0 .00 RPM 3 .90 RPM
SRP007412_heart 0 .00 RPM 3 .78 RPM
SRP007412_kidney 0 .00 RPM 5 .15 RPM
SRP007412_liver 0 .00 RPM 4 .77 RPM
SRP007412_testis 0 .00 RPM 6 .84 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2032 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2032 has 5 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2930
Pan troglodytes retro_ptro_2062
Pongo abelii retro_pabe_2523
Macaca mulatta retro_mmul_1953
Callithrix jacchus retro_cjac_2282

Parental genes homology:
Parental genes homology involve 13 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000124381 retrocopy
Callithrix jacchus ENSCJAG000000067772 retrocopies
Cavia porcellus ENSCPOG000000033431 retrocopy
Dasypus novemcinctus ENSDNOG000000134602 retrocopies
Homo sapiens ENSG000001383822 retrocopies
Gorilla gorilla ENSGGOG00000022484 2 retrocopies
retro_ggor_1064, retro_ggor_2032 ,
Loxodonta africana ENSLAFG000000180442 retrocopies
Macaca mulatta ENSMMUG000000230543 retrocopies
Nomascus leucogenys ENSNLEG000000050184 retrocopies
Oryctolagus cuniculus ENSOCUG000000104051 retrocopy
Pongo abelii ENSPPYG000000129162 retrocopies
Pan troglodytes ENSPTRG000000126213 retrocopies
Tursiops truncatus ENSTTRG000000021542 retrocopies



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