RetrogeneDB ID: | retro_cfam_371 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 10:387398..387694(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000017884 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.58 % |
Parental protein coverage: | 52.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | AQIPIVATTSTPG-IARNSKKRPA-SPSHNGSSAGSYGASKKKKVSAASFTQGISMEAMSENKMVTSDFS |
AQI.I.ATTSTP...AR.S...PA..PSH.G..AG.Y...KKK..SAASF..GISME..SENK.V..DFS | |
Retrocopy | AQIAIAATTSTPE<MARDSEETPA<RPSHKGRGAGDYSSRKKKAASAASFR*GISMEGKSENKVVPFDFS |
Parental | TGPMEKAAKPLP-FKDPNFVHSG-HGGAVAGKKN |
..P..KAA.PLP..KDPN.VH....GGAVAG..N | |
Retrocopy | PRPLGKAAQPLP<IKDPNLVHRA<NGGAVAGRQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 19 .91 RPM |
SRP017611_brain | 0 .00 RPM | 15 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .10 RPM |
SRP017611_liver | 0 .00 RPM | 3 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017884 | 1 retrocopy |
retro_cfam_371 ,
|
Myotis lucifugus | ENSMLUG00000030708 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000020108 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011443 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017436 | 1 retrocopy |